| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is kduD [H]
Identifier: 21240943
GI number: 21240943
Start: 208080
End: 208835
Strand: Direct
Name: kduD [H]
Synonym: XAC0169
Alternate gene names: 21240943
Gene position: 208080-208835 (Clockwise)
Preceding gene: 21240942
Following gene: 21240944
Centisome position: 4.02
GC content: 66.27
Gene sequence:
>756_bases ATGAGCAATCCGTTCAGTCTCGAAGGCAAGGTCGCACTGGTCACCGGTGCCAACACCGGCTTGGGCCAGGGCATCGCGTT GGCATTGGCCCAAGCCGGTGCCGACATCGCTGCCGCCGGCATCCAGGCGCCCACCGAGACCGAAGCGAAGGTCAAGGCGC TGGGCCGCCGGTTCATCGCCATCGAAGCCAACCTGATCAGCATCGAGCCAGTGCAGCGCATCATCGACGAGACCATCGCC GGCCTCGGCGGGCTGGATATCCTGGTCAACAACGCCGGCCTGATCCGTCGCACCGATGCGGTGGATTTCAGCGAGCAGGA TTGGGACGACGTGCTCAACGTCAACCTGAAGTCGGCCTTCTTCATGGCGCAGGCCGCAGGCCGTCACTTCATCGCGCAGG GCCGCGGCAAGATCATCAACATCGCCTCGATGCTGTCGTTCCAGGGCGGTATCCGCGTGCCGTCCTACACCGCCAGCAAG TCGGGCATCGCCGGCATCACCCGCCTGCTTGCCAACGAATGGGCCAGCAAGGGCGTGACCACCAATGCCATCGCACCGGG CTATATGGCCACCGACAACACTGCGCAGCTGCGTGCCGACGAAGACCGCAACAAGGCCATCCTGGACCGCATCCCGGCCG CGCGCTGGGGCGTGCCGGCCGACCTGGGCGGCACCGCGGTGTTCCTGGCCAGCAGCGCCTCGGACTACGTCAACGGCGCG ATCATCCCGGTCGACGGCGGCTGGCTGGCACGCTAA
Upstream 100 bases:
>100_bases ATGCGCCTTCGGCGCTGCACCCATTCGTATGACGTCATCGTCCGCACACTACGCGGTTCACTCAGCACACCACGGCACAT CCAGCAGGAGCGATAAGGTA
Downstream 100 bases:
>100_bases ACGCTCGCGCATGGACGGCTGTCCTTCTCCCTTCGGGAGAAGGTGCCCGAAGGGCGGATGAGGGTCGGCAACTACGCATC AACCAGATGCGCACTTCCGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 2-keto-3-deoxygluconate 5-dehydrogenase; 2-keto-3-deoxygluconate oxidoreductase; KDG oxidoreductase [H]
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MSNPFSLEGKVALVTGANTGLGQGIALALAQAGADIAAAGIQAPTETEAKVKALGRRFIAIEANLISIEPVQRIIDETIA GLGGLDILVNNAGLIRRTDAVDFSEQDWDDVLNVNLKSAFFMAQAAGRHFIAQGRGKIINIASMLSFQGGIRVPSYTASK SGIAGITRLLANEWASKGVTTNAIAPGYMATDNTAQLRADEDRNKAILDRIPAARWGVPADLGGTAVFLASSASDYVNGA IIPVDGGWLAR
Sequences:
>Translated_251_residues MSNPFSLEGKVALVTGANTGLGQGIALALAQAGADIAAAGIQAPTETEAKVKALGRRFIAIEANLISIEPVQRIIDETIA GLGGLDILVNNAGLIRRTDAVDFSEQDWDDVLNVNLKSAFFMAQAAGRHFIAQGRGKIINIASMLSFQGGIRVPSYTASK SGIAGITRLLANEWASKGVTTNAIAPGYMATDNTAQLRADEDRNKAILDRIPAARWGVPADLGGTAVFLASSASDYVNGA IIPVDGGWLAR >Mature_250_residues SNPFSLEGKVALVTGANTGLGQGIALALAQAGADIAAAGIQAPTETEAKVKALGRRFIAIEANLISIEPVQRIIDETIAG LGGLDILVNNAGLIRRTDAVDFSEQDWDDVLNVNLKSAFFMAQAAGRHFIAQGRGKIINIASMLSFQGGIRVPSYTASKS GIAGITRLLANEWASKGVTTNAIAPGYMATDNTAQLRADEDRNKAILDRIPAARWGVPADLGGTAVFLASSASDYVNGAI IPVDGGWLAR
Specific function: Catalyzes the reduction of 2,5-diketo-3-deoxygluconate (DKII or 4,6-dihydroxy-2,5-dioxohexanoate) into 2-keto-3- deoxygluconate (KDG or 2-dehydro-3-deoxygluconate) with a concomitant oxidation of NADH [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=29.5275590551181, Blast_Score=118, Evalue=5e-27, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=31.3725490196078, Blast_Score=118, Evalue=6e-27, Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=31.0483870967742, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=28.6274509803922, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=31.9502074688797, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=31.7073170731707, Blast_Score=104, Evalue=7e-23, Organism=Homo sapiens, GI4504505, Length=260, Percent_Identity=28.8461538461538, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=27.8225806451613, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=31.3725490196078, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=31.8181818181818, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=26.6932270916335, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=30.9803921568627, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI31542939, Length=214, Percent_Identity=30.3738317757009, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=26.7441860465116, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI59889578, Length=184, Percent_Identity=31.5217391304348, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI209862901, Length=206, Percent_Identity=29.6116504854369, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI19923983, Length=206, Percent_Identity=29.6116504854369, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=30.635838150289, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=28.6274509803922, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI142976729, Length=197, Percent_Identity=27.4111675126904, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=27.1276595744681, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI210032110, Length=197, Percent_Identity=24.8730964467005, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI7705855, Length=200, Percent_Identity=28.5, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI109715829, Length=238, Percent_Identity=26.890756302521, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI40254986, Length=201, Percent_Identity=27.363184079602, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI225579078, Length=205, Percent_Identity=28.2926829268293, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=69.758064516129, Blast_Score=354, Evalue=3e-99, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=43.9516129032258, Blast_Score=207, Evalue=4e-55, Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=39.8406374501992, Blast_Score=174, Evalue=7e-45, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=34.1463414634146, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=30.327868852459, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=33.7301587301587, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=32.258064516129, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=29.6747967479675, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=31.1023622047244, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=26.6129032258064, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=28.1853281853282, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=27.4900398406374, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787526, Length=225, Percent_Identity=27.1111111111111, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1788891, Length=242, Percent_Identity=28.5123966942149, Blast_Score=67, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=33.7209302325581, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=31.2757201646091, Blast_Score=118, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=31.1284046692607, Blast_Score=116, Evalue=9e-27, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=29.718875502008, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=31.3492063492063, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=29.5081967213115, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=31.7073170731707, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=31.1538461538462, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=29.4339622641509, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=28.4090909090909, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=28.957528957529, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560332, Length=257, Percent_Identity=31.5175097276265, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17559104, Length=256, Percent_Identity=29.6875, Blast_Score=94, Evalue=4e-20, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=28.3524904214559, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17562910, Length=256, Percent_Identity=28.90625, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=28.8389513108614, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=29.5019157088123, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=34.6007604562738, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17568967, Length=191, Percent_Identity=31.413612565445, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=33.4645669291339, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=27.6264591439689, Blast_Score=89, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17563726, Length=255, Percent_Identity=27.4509803921569, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=26.4591439688716, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=29.3893129770992, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17531453, Length=257, Percent_Identity=29.5719844357977, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=27.7486910994764, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=28.4615384615385, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17536025, Length=252, Percent_Identity=28.968253968254, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17555612, Length=221, Percent_Identity=31.2217194570136, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=28.6245353159851, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=28.2352941176471, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=28.7958115183246, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=29.1005291005291, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=27.6923076923077, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=24.7104247104247, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71997099, Length=211, Percent_Identity=28.436018957346, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI32563809, Length=195, Percent_Identity=25.1282051282051, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71982365, Length=197, Percent_Identity=24.8730964467005, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17507613, Length=195, Percent_Identity=25.1282051282051, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17508895, Length=190, Percent_Identity=29.4736842105263, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=31.3131313131313, Blast_Score=89, Evalue=6e-19, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=5e-17, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=35.0806451612903, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=30, Blast_Score=118, Evalue=3e-27, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=29.8387096774194, Blast_Score=117, Evalue=6e-27, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=32.0158102766798, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=29.9610894941634, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=30.952380952381, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=29.0322580645161, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=34.2105263157895, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=27.734375, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI21357673, Length=198, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24644337, Length=203, Percent_Identity=26.1083743842365, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24649181, Length=201, Percent_Identity=28.3582089552239, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI221331218, Length=218, Percent_Identity=27.5229357798165, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24665243, Length=218, Percent_Identity=27.5229357798165, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=28, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=24.3654822335025, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI221331216, Length=219, Percent_Identity=27.3972602739726, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24665247, Length=219, Percent_Identity=27.3972602739726, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24640492, Length=210, Percent_Identity=24.2857142857143, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011286 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.127 [H]
Molecular weight: Translated: 26145; Mature: 26014
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNPFSLEGKVALVTGANTGLGQGIALALAQAGADIAAAGIQAPTETEAKVKALGRRFIA CCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCEEEE IEANLISIEPVQRIIDETIAGLGGLDILVNNAGLIRRTDAVDFSEQDWDDVLNVNLKSAF EEEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHCCCHHHHH FMAQAAGRHFIAQGRGKIINIASMLSFQGGIRVPSYTASKSGIAGITRLLANEWASKGVT HHHHHCCCEEEECCCCCEEEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC TNAIAPGYMATDNTAQLRADEDRNKAILDRIPAARWGVPADLGGTAVFLASSASDYVNGA CCCCCCCEEECCCCEEEECCCCCCHHHHHHCCCHHCCCCCCCCCEEEEEECCCCHHHCCE IIPVDGGWLAR EEEECCCCCCC >Mature Secondary Structure SNPFSLEGKVALVTGANTGLGQGIALALAQAGADIAAAGIQAPTETEAKVKALGRRFIA CCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCEEEE IEANLISIEPVQRIIDETIAGLGGLDILVNNAGLIRRTDAVDFSEQDWDDVLNVNLKSAF EEEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCCCCHHHHHCCCHHHHH FMAQAAGRHFIAQGRGKIINIASMLSFQGGIRVPSYTASKSGIAGITRLLANEWASKGVT HHHHHCCCEEEECCCCCEEEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC TNAIAPGYMATDNTAQLRADEDRNKAILDRIPAARWGVPADLGGTAVFLASSASDYVNGA CCCCCCCEEECCCCEEEECCCCCCHHHHHHCCCHHCCCCCCCCCEEEEEECCCCHHHCCE IIPVDGGWLAR EEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 2836407; 1766386 [H]