The gene/protein map for NC_003919 is currently unavailable.
Definition Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome.
Accession NC_003919
Length 5,175,554

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The map label for this gene is ygfF [C]

Identifier: 21240857

GI number: 21240857

Start: 101144

End: 101881

Strand: Reverse

Name: ygfF [C]

Synonym: XAC0083

Alternate gene names: 21240857

Gene position: 101881-101144 (Counterclockwise)

Preceding gene: 21240859

Following gene: 21240856

Centisome position: 1.97

GC content: 66.8

Gene sequence:

>738_bases
ATGACTCAGCAGCAGAAAGTTGCATTGGTGACCGGCGCCTCGCGCGGTATTGGCGCTGCCATCGCGCAGCGATTGGCCGG
CGATGGCTTTGCCGTGGTGCTCAATTACGCCGGCCATGCGGATGAGGCCGATCGACTGGTGCGCAGCATCGAAGCGGACG
GTGGCCGCGCGATCAGCGTGCAGGCCGATGTCAGCGACCCGGCCGCCGTCGCGCGCCTGTTTGCCGCGGCCGAGACTGCG
TTCGGCGGCGTGGATGTGCTGGTCAACAACGCCGGCATCATGCAGCTGGCCACGCTGGCCGACAGCGACGATGCCTTGTT
CGACAAACACATCGCGATCAATCTGAAAGGCACCTTCAACACGCTGCGCCAGGCCGCACGACGGCTGCGCAACGGGGGCC
GCATCGTCAACCTGTCCACCAGCGTGGTCGGCCTGAAGCTGGAAACCTACGGAGTGTATGCGGCCACCAAGGCGGCGGTG
GAAACGCTGACGGCGATCCTGTCCAAGGAATTGCGCGGGCGTGCCATCACCGTCAACGCGGTGGCGCCTGGCCCGACCGG
CACGGCGCTGTTCCTGGACGGCAAGTCGCCGGAGTTGATCGAACGCTTGTCCAAGGCCAACCCGCTGGAACGTCTTGGCT
GCCCGGACGACATCGCGGCGGCGGTGGCGTTCCTGGTCGGCCCGGATGGCGGCTGGATCAACGGCCAGGTCCTGCGCGCC
AACGGCGGCATGGTCTGA

Upstream 100 bases:

>100_bases
GCTGGAAACAATGCTGTGCAGTTTAGTGTGATGATCGTCGTGTCATTGCATTGGATAGTTTCCGCAACGCCGCAGCCCGC
GGCATGACGGAAGAACTTGC

Downstream 100 bases:

>100_bases
CCCGCTGCGGCGCGCTGCAGTGCGCACGCTGCTGGTTTTCCCCCTCGAGGAGCAATGACATGAGCAAACGCATTCTGGTG
ACTGGCGCGTCCAGCGGCTT

Product: short chain dehydrogenase

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MTQQQKVALVTGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADRLVRSIEADGGRAISVQADVSDPAAVARLFAAAETA
FGGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFNTLRQAARRLRNGGRIVNLSTSVVGLKLETYGVYAATKAAV
ETLTAILSKELRGRAITVNAVAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRA
NGGMV

Sequences:

>Translated_245_residues
MTQQQKVALVTGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADRLVRSIEADGGRAISVQADVSDPAAVARLFAAAETA
FGGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFNTLRQAARRLRNGGRIVNLSTSVVGLKLETYGVYAATKAAV
ETLTAILSKELRGRAITVNAVAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRA
NGGMV
>Mature_244_residues
TQQQKVALVTGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADRLVRSIEADGGRAISVQADVSDPAAVARLFAAAETAF
GGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFNTLRQAARRLRNGGRIVNLSTSVVGLKLETYGVYAATKAAVE
TLTAILSKELRGRAITVNAVAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRAN
GGMV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=37.6984126984127, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=31.7073170731707, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=34.6938775510204, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=32.6771653543307, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI109715829, Length=236, Percent_Identity=31.3559322033898, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=28.9156626506024, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=31.5573770491803, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=31.2977099236641, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI33667109, Length=182, Percent_Identity=34.6153846153846, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI40254986, Length=186, Percent_Identity=30.1075268817204, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI4504505, Length=254, Percent_Identity=29.1338582677165, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4504503, Length=190, Percent_Identity=30, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=30.1020408163265, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI83715985, Length=263, Percent_Identity=30.4182509505703, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI126723191, Length=179, Percent_Identity=31.2849162011173, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI59889578, Length=203, Percent_Identity=29.064039408867, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=35.5102040816327, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=35.3413654618474, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=34.9397590361446, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082160, Length=244, Percent_Identity=31.9672131147541, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=32.9166666666667, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=29.0322580645161, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1789378, Length=240, Percent_Identity=31.6666666666667, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=33.4710743801653, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=29.3650793650794, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=31.7073170731707, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=28.2945736434109, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787820, Length=231, Percent_Identity=27.7056277056277, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=27.6679841897233, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786701, Length=232, Percent_Identity=31.0344827586207, Blast_Score=64, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=248, Percent_Identity=32.258064516129, Blast_Score=94, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=34.2857142857143, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=29.2682926829268, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=248, Percent_Identity=31.0483870967742, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=256, Percent_Identity=30.078125, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=30.8943089430894, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=31.2757201646091, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=29.7619047619048, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=30.1526717557252, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=28.0769230769231, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17561272, Length=213, Percent_Identity=32.3943661971831, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=31.25, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=29.5019157088123, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=253, Percent_Identity=29.2490118577075, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=253, Percent_Identity=26.8774703557312, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=257, Percent_Identity=31.1284046692607, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=241, Percent_Identity=26.9709543568465, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=26.9076305220884, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17558628, Length=190, Percent_Identity=32.6315789473684, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=256, Percent_Identity=28.125, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=31.1023622047244, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=258, Percent_Identity=29.8449612403101, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=204, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=31.6981132075472, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=27.4131274131274, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=256, Percent_Identity=28.515625, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=26.953125, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=28.8461538461538, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=28.1853281853282, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=200, Percent_Identity=28.5, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=257, Percent_Identity=28.4046692607004, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=29.2307692307692, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=250, Percent_Identity=28.4, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=35.4838709677419, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=34.136546184739, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=33.2, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI24643142, Length=239, Percent_Identity=31.7991631799163, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=34.2412451361868, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=30.4878048780488, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=32.5301204819277, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24663911, Length=236, Percent_Identity=30.9322033898305, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI116007234, Length=241, Percent_Identity=30.2904564315353, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28571387, Length=252, Percent_Identity=31.7460317460317, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24648693, Length=234, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21355889, Length=234, Percent_Identity=32.0512820512821, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641232, Length=235, Percent_Identity=30.6382978723404, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007236, Length=242, Percent_Identity=30.9917355371901, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21357673, Length=187, Percent_Identity=31.5508021390374, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24644337, Length=169, Percent_Identity=36.094674556213, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24641388, Length=201, Percent_Identity=32.8358208955224, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI281364494, Length=236, Percent_Identity=32.6271186440678, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=28.4046692607004, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007238, Length=181, Percent_Identity=34.8066298342541, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007232, Length=185, Percent_Identity=31.3513513513514, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24648944, Length=252, Percent_Identity=30.1587301587302, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24656154, Length=212, Percent_Identity=30.6603773584906, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI19922628, Length=212, Percent_Identity=30.6603773584906, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25274; Mature: 25143

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTQQQKVALVTGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADRLVRSIEADGGRAISV
CCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEE
QADVSDPAAVARLFAAAETAFGGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFN
EECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEEECCCHH
TLRQAARRLRNGGRIVNLSTSVVGLKLETYGVYAATKAAVETLTAILSKELRGRAITVNA
HHHHHHHHHHCCCEEEEEECEEEEEEEEECEEHHHHHHHHHHHHHHHHHHHCCCEEEEEE
VAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRA
ECCCCCCEEEEECCCCHHHHHHHHCCCCHHHCCCCHHHHHHHHEEECCCCCEECCEEEEC
NGGMV
CCCCC
>Mature Secondary Structure 
TQQQKVALVTGASRGIGAAIAQRLAGDGFAVVLNYAGHADEADRLVRSIEADGGRAISV
CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEE
QADVSDPAAVARLFAAAETAFGGVDVLVNNAGIMQLATLADSDDALFDKHIAINLKGTFN
EECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEEECCCHH
TLRQAARRLRNGGRIVNLSTSVVGLKLETYGVYAATKAAVETLTAILSKELRGRAITVNA
HHHHHHHHHHCCCEEEEEECEEEEEEEEECEEHHHHHHHHHHHHHHHHHHHCCCEEEEEE
VAPGPTGTALFLDGKSPELIERLSKANPLERLGCPDDIAAAVAFLVGPDGGWINGQVLRA
ECCCCCCEEEEECCCCHHHHHHHHCCCCHHHCCCCHHHHHHHHEEECCCCCEECCEEEEC
NGGMV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]