| Definition | Campylobacter jejuni RM1221, complete genome. |
|---|---|
| Accession | NC_003912 |
| Length | 1,777,831 |
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The map label for this gene is hypF [H]
Identifier: 57238183
GI number: 57238183
Start: 658169
End: 660358
Strand: Direct
Name: hypF [H]
Synonym: CJE0725
Alternate gene names: 57238183
Gene position: 658169-660358 (Clockwise)
Preceding gene: 57238184
Following gene: 57238182
Centisome position: 37.02
GC content: 30.27
Gene sequence:
>2190_bases ATGCGCCACTTAGGGTATAAGATCAAAATTTCAGGTCTAGTTCAAGGGGTGGGTTTTCGCCCCTTAGTTTATGAACTAGC TTTGAAATCAAAGCTTTTTGGAGAAGTAAGAAATGATGGTTTTGGGATAGAAATCATCCTTGCTTGCACTCAAAAAGAAT GTGAAAATTTCATAGAAAATTTAAAAAATCATCTTCCACCTTTAGCAAGAATAGATCAGCTTATAATCACGCAAATTTCA ATTTCAAACTATGAGAATTTTAGCATTACTCCTTCTTTAGAGAATACAAAAAGCACGCCTATGTTAAGCGATTTTGCGTT TTGTAAGGAGTGTAAAAAAGAATTTTTTGATGAAAAAAATCCACGCTTTTTATATCCTTTTATCACTTGCACACATTGTG GGCCACGCTTTAGTATTATAAAAAGTCTTCCTTATGATAGATTTAATACCTCTATGCAAGAATTATTGATGTGTGAGTTT TGTAAAAGCGAATACAAAGATCCTAAAAATAGGCGTTTTCATGCCCAGCCTATTAGTTGTCCTAAATGCAAAATCAATGT TTTTCTTAAAAATCCAAAGGGTGAAATTTTAGCCAAAGATCAAGAAGCTTTTATACAAAGTGCGAAGTTTTTAAAGGAAG GTAAAATTTTAGCCATTAAAGGCATGGGCGGTTTTCATCTCATGTGTGATGCGTTTAATGAAGAAGCTTTAAAAACTCTA AGACTTAGAAAAAATCGCCCCAAAAAACCCTTTGCTTTGATGTGTAAAGATTTACAAAGTGCTAAAGAACTTGCCTTTAT AGATGAAAAAGAAGAAGCTTTGCTTGGTGGGGTTTTGGCTCCTATTGTGATTTTAAAGGCAAAAAAAGCCTTTTCTTTAA TCGCTCCTGATGTAGATAAAATCGGCATTATGCTAGCTTATACGCCTTTACATCTTTTGCTTTTTGAGTATTTTAAAGGA AATCTTGTGGCAACAAGTGCGAATTTAAGCGGAGAAAGTATCATTAAAGATGAGTTTAATTTGCGTCAAAAACTTGATAA AGTTTTTGATTTTTATTTGGATTATGATAGGGAAATTATCAATGCAAGTGATGACAGCATAGCTCAAGTGGTAAATGGCA AAACTATGTTTTTGCGTACTTCAAGGGGTTTAAATCCTTTTTATTTGGAAAGAAATTTTAATAAAAAAGGCACTTTTTTA GCTTTAGGTGCGGAACTTAACAATGAATTTGTGATTTTTTATGAAAATAAACTTTTAATTTCTCCTTATATAGGGGATTT GAAAAGTCTTGATGTGCATGAGAGATTTTTTAAACTTTTAGAATTTTTTAAACAAAATTATGATTTGAAATTTGATGCGA TTTTGTGTGATAAACACCCGCATTTTAGCTATGCAAAAGAATTTGAAGAAAGGATTAAAATTTCTCATCATTATGCGCAT TTTTGTGCGGCTTATTTTGAATACGAAGAAAATTTTGCAAAAGATGAAAAGGCTTTAGCTTTTATTTGTGATGGAACAGG TTATGGCGAAGATGGTAAAATTTGGGGTGGAGAAGTTTTTGTAGGAAATTTAAAAGAATATGAAAGAATTGCACATTTTG AAAATTTCACTCTTATAAATAGTGATATTAAAAATATACAAAATTTAGCCTTAAGTCTTATTTTTCATTATGATTTAGAA GATAAGGCTAAGGATTTTTTAGCAAAAATTCCAAAAATTAAACTTAAAAATCTTAAAAAAATTTATTCTCATTCTAACTT ACAAACAAGTTCTTTAGGACGCATTATCGATGCTTTTGGAAGTATTGTTTTTAACTTAGAAAAAAGTTCTTATGAAGCTC AAGTTGGCTTAATGTGTGAAGCTTTTTATGATAAAAATCTTGATTTTTCTTATAAGCTTTTTGTAGAAAAAGGGCAGGTT AATTTTAAAAATTTAATCCTAGGGGCTTTGCAAGATGAAAAAACTAAGGCGATTACAGGTATGTTTAATGCCTTGGCAAA TTTTATCATAGATTTTAGCAAAGATTATGATTTAAAAGTGCTTTTAAGCGGAGGGGTTTTTCAAAACATAACCTTGCTTG AAATTTTAAAAGCTAAAAATTTTGATTTTTTTATACCTTTAAAGTACCCTTGTAATGATAGCTCCATAGCCTTAGGACAA ATGGTGCATTTTTTAAATTTAGAAAAATAA
Upstream 100 bases:
>100_bases AAAAAGCAAAGTGATTTAGCACTTATAAGTGGATCTTTGTTTGAACATAAATCTTTACTTAAAAATACTTTAAAACATCT TAAAAATTGTCAGTTAAGCG
Downstream 100 bases:
>100_bases AGCAAATATTCTAAAAACTCATAATTTTTTAATGCTTTTAAGGTTAAAATGAAACAAAAATATAGAAGGAAAGAAAATGT GTAAAGATTGCGGCTGCTCT
Product: [NiFe] hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIEIILACTQKECENFIENLKNHLPPLARIDQLIITQIS ISNYENFSITPSLENTKSTPMLSDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF CKSEYKDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILAIKGMGGFHLMCDAFNEEALKTL RLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLGGVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKG NLVATSANLSGESIIKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERNFNKKGTFL ALGAELNNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLKFDAILCDKHPHFSYAKEFEERIKISHHYAH FCAAYFEYEENFAKDEKALAFICDGTGYGEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLE DKAKDFLAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYDKNLDFSYKLFVEKGQV NFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLLSGGVFQNITLLEILKAKNFDFFIPLKYPCNDSSIALGQ MVHFLNLEK
Sequences:
>Translated_729_residues MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIEIILACTQKECENFIENLKNHLPPLARIDQLIITQIS ISNYENFSITPSLENTKSTPMLSDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF CKSEYKDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILAIKGMGGFHLMCDAFNEEALKTL RLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLGGVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKG NLVATSANLSGESIIKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERNFNKKGTFL ALGAELNNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLKFDAILCDKHPHFSYAKEFEERIKISHHYAH FCAAYFEYEENFAKDEKALAFICDGTGYGEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLE DKAKDFLAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYDKNLDFSYKLFVEKGQV NFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLLSGGVFQNITLLEILKAKNFDFFIPLKYPCNDSSIALGQ MVHFLNLEK >Mature_729_residues MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIEIILACTQKECENFIENLKNHLPPLARIDQLIITQIS ISNYENFSITPSLENTKSTPMLSDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF CKSEYKDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILAIKGMGGFHLMCDAFNEEALKTL RLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLGGVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKG NLVATSANLSGESIIKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERNFNKKGTFL ALGAELNNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLKFDAILCDKHPHFSYAKEFEERIKISHHYAH FCAAYFEYEENFAKDEKALAFICDGTGYGEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLE DKAKDFLAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYDKNLDFSYKLFVEKGQV NFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLLSGGVFQNITLLEILKAKNFDFFIPLKYPCNDSSIALGQ MVHFLNLEK
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=761, Percent_Identity=31.8002628120894, Blast_Score=326, Evalue=3e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 83678; Mature: 83678
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIEIILACTQKECENFIEN CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHH LKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPMLSDFAFCKECKKEFFDEKN HHHHCCHHHHHHHHHHEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC PRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEFCKSEYKDPKNRRFHAQPISC CEEEEEEEEEECCCCHHHHHHHCCCCHHCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC PKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILAIKGMGGFHLMCDAFNEEALKTL CCEEEEEEEECCCCCEEECCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHH RLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLGGVLAPIVILKAKKAFSLIAPDVDK HHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH IGIMLAYTPLHLLLFEYFKGNLVATSANLSGESIIKDEFNLRQKLDKVFDFYLDYDREII HCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHC NASDDSIAQVVNGKTMFLRTSRGLNPFYLERNFNKKGTFLALGAELNNEFVIFYENKLLI CCCCHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEECCEEEE SPYIGDLKSLDVHERFFKLLEFFKQNYDLKFDAILCDKHPHFSYAKEFEERIKISHHYAH CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH FCAAYFEYEENFAKDEKALAFICDGTGYGEDGKIWGGEVFVGNLKEYERIAHFENFTLIN HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCEEEECCHHHHHHHHHHCCEEEEH SDIKNIQNLALSLIFHYDLEDKAKDFLAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFG HHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH SIVFNLEKSSYEAQVGLMCEAFYDKNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITG HHEEEECCCCCCCHHHEEEEEHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCHHHHHHH MFNALANFIIDFSKDYDLKVLLSGGVFQNITLLEILKAKNFDFFIPLKYPCNDSSIALGQ HHHHHHHHHEECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH MVHFLNLEK HHHHHCCCC >Mature Secondary Structure MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIEIILACTQKECENFIEN CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHH LKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPMLSDFAFCKECKKEFFDEKN HHHHCCHHHHHHHHHHEEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC PRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEFCKSEYKDPKNRRFHAQPISC CEEEEEEEEEECCCCHHHHHHHCCCCHHCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC PKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILAIKGMGGFHLMCDAFNEEALKTL CCEEEEEEEECCCCCEEECCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHH RLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLGGVLAPIVILKAKKAFSLIAPDVDK HHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH IGIMLAYTPLHLLLFEYFKGNLVATSANLSGESIIKDEFNLRQKLDKVFDFYLDYDREII HCEEEEHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHC NASDDSIAQVVNGKTMFLRTSRGLNPFYLERNFNKKGTFLALGAELNNEFVIFYENKLLI CCCCHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEECCEEEE SPYIGDLKSLDVHERFFKLLEFFKQNYDLKFDAILCDKHPHFSYAKEFEERIKISHHYAH CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH FCAAYFEYEENFAKDEKALAFICDGTGYGEDGKIWGGEVFVGNLKEYERIAHFENFTLIN HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCEEEECCHHHHHHHHHHCCEEEEH SDIKNIQNLALSLIFHYDLEDKAKDFLAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFG HHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH SIVFNLEKSSYEAQVGLMCEAFYDKNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITG HHEEEECCCCCCCHHHEEEEEHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCHHHHHHH MFNALANFIIDFSKDYDLKVLLSGGVFQNITLLEILKAKNFDFFIPLKYPCNDSSIALGQ HHHHHHHHHEECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH MVHFLNLEK HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]