Click here to switch to the map view.

The map label for this gene is ytbD [H]

Identifier: 57238114

GI number: 57238114

Start: 1289942

End: 1291141

Strand: Direct

Name: ytbD [H]

Synonym: CJE1377

Alternate gene names: 57238114

Gene position: 1289942-1291141 (Clockwise)

Preceding gene: 57238111

Following gene: 57238115

Centisome position: 72.56

GC content: 32.75

Gene sequence:

>1200_bases
ATGCAAAATTACAAAAAAGCTCTTTTTGCACTAGCTCTTAGTGCTTTTTGTATGGGCGTAACTGAATTTGTTATGGCAGG
AGTTTTGGTTGATGTTGAAGCGTATTTTAGCGTAGATGCAAAAACCGCGGGCTATCTTACAACCTTATATGCTATAGGTG
TTGTTATAGGTGCTCCTCTTATCACCATACCTTTAAGTCGTTTTCATAGACATACACAACTTTTAATCAATCTTGGAATT
TTTGCTCTAGCAAATTTCATCATCTTTTTTAGCCAAAATTTCTATCTTACTGTTTTTGCACGCTTTATAGCAGGAACACA
ACATGGGGTATTTTTTGTCATTGCCACCTTAGCTGTAAGTGCTATAACTCCAGATGATAAAAAATCAAGTGCTCTAGCTA
TAATGGTCACAGGGCTTACTGTAGCCTTAGTTACTGGAGTGCCGCTTGGAACTTTTATAGGGCATTATTTTGGCTTTAAA
TTTATCTTTTTACTCATTTTTATCATTACAAGTCTAGCATTTTTTGGAGTATGGCATATGATGCCCAAAAATTTACATCC
TAGCCCAACCAGTCTTAAAAATCTAATCCCTGCTTTTTCTCATCAAAATTTGTTAAAAACTTATACTATAACCATTTGTA
GTTGTGGGGCTCAATTTGTTCTTTATACTTATTTGCAAAAAATACTTGTAGAAATAAGCGGTTTTAAAGTCCAAGATACA
GCTTATATCTTGCTTTTATATGGAATTTGTGCAATTTGTGGGAATTTATGGGGCGGAAAAATAGTAGATAAAAAAGGTGC
TATTTTTTCTTTGCGTCTTATTTTAAGCATACAAGTTCTAGTATTTTTAAGTGTATTTCTCACCATGCATTCTAAAATTT
TAATCATTTTTAGCGTAGCTTTGATAGGATTTTTTGCCTTTTCAACCATACCTGCACTAAAAATGCTTAGCATTACTAAA
GCTAAACGCCATACCTATAAAGTCATAGACAGTACAGTAAGTGTGAATGAAGCAGCTTTTAATGTAGGCATAGCTTTAGC
AAGTTTTTTAGGTGGGATTGTTTTAGCAAGATTGGGTATAGAATTTAATGCTTTATTTTCAGCACTTTTTGTAAGCCCTG
CTTTGATTTTTGCCTTGCTTTTTGCCAAAGATAAATTAAATTATAAAAAATTTCAAAGAAAAAGTTTTACAAAGGTATAA

Upstream 100 bases:

>100_bases
AAATTTTTATTTTATTTTAACAAAAATATTTTGAATTTTTTAAGGAAATTAAGCCTTTATTTTATTATAATGCGTTTTTA
TTTTTTATAAGGAACTTAAA

Downstream 100 bases:

>100_bases
ATTGGAATAGAAATTGCTTGCTTATTTAATGTAAAGTTAAATAAAGGAGGAGAAAATGGTAGTAGATAATACTCAAAAAA
CATCAAATGCTATCTTTAGC

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAGYLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGI
FALANFIIFFSQNFYLTVFARFIAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQFVLYTYLQKILVEISGFKVQDT
AYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILSIQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITK
AKRHTYKVIDSTVSVNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQRKSFTKV

Sequences:

>Translated_399_residues
MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAGYLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGI
FALANFIIFFSQNFYLTVFARFIAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQFVLYTYLQKILVEISGFKVQDT
AYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILSIQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITK
AKRHTYKVIDSTVSVNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQRKSFTKV
>Mature_399_residues
MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAGYLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGI
FALANFIIFFSQNFYLTVFARFIAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQFVLYTYLQKILVEISGFKVQDT
AYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILSIQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITK
AKRHTYKVIDSTVSVNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQRKSFTKV

Specific function: May Be Involved In Either The Transport Or Processing Of Arabinose Polymers. [C]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=393, Percent_Identity=27.2264631043257, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787947, Length=384, Percent_Identity=28.90625, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1787808, Length=230, Percent_Identity=30.4347826086957, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693198, Length=390, Percent_Identity=22.5641025641026, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43848; Mature: 43848

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAGYLTTLYAIGVVIGAPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHH
ITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTVFARFIAGTQHGVFFVIATLAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFKFIFLLIFIITSLAFFGVWHM
HCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQFVLYTYLQKILVEISGFKVQDT
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEECHH
AYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILSIQVLVFLSVFLTMHSKILIIFSVA
HHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVSVNEAAFNVGIALASFLGGIVLARLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EFNALFSALFVSPALIFALLFAKDKLNYKKFQRKSFTKV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAGYLTTLYAIGVVIGAPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHH
ITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTVFARFIAGTQHGVFFVIATLAVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFKFIFLLIFIITSLAFFGVWHM
HCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQFVLYTYLQKILVEISGFKVQDT
CCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEECHH
AYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILSIQVLVFLSVFLTMHSKILIIFSVA
HHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVSVNEAAFNVGIALASFLGGIVLARLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EFNALFSALFVSPALIFALLFAKDKLNYKKFQRKSFTKV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]