Click here to switch to the map view.

The map label for this gene is rhaS [C]

Identifier: 57237928

GI number: 57237928

Start: 1104403

End: 1105293

Strand: Reverse

Name: rhaS [C]

Synonym: CJE1186

Alternate gene names: 57237928

Gene position: 1105293-1104403 (Counterclockwise)

Preceding gene: 57237929

Following gene: 57237927

Centisome position: 62.17

GC content: 25.36

Gene sequence:

>891_bases
ATGAATAAAATTCTTTCTTTACCAGAAGATTTAAAGCAATTAAAAGGTGTCAATTATAAAAAAATTAAATCTTGCACTTT
TGCTAAATATACACAAACGGATACTTCGCATTCTACTTTTGTTAATGTAGGAAGTCATCTTTTAACTTTTGTTCGCAAAG
GATATAAAATTTTACACACTGCATCAAAAGATTATAAGATTAACTCTTATGAAACTTTGTTTTTAAAAGCTGGGAGCTAT
ACTTTAAGCAATGTAGGACTTAGTAAAGGAGTTTATGAAGCTTATTTATTTTTTTTTGACAATGCATTTTTAATTGAGCT
TATTTATAAGTATAAAGATTTTTTTAAACTAGATCAAAAGTTTCAAAACTATGAAATTTTTTGGGTAAAAAATGATAAGA
TTTTGCAAGGAATTTTGGAAAGTTTTTCACCGCATTTTGAAGAAAATACGCAAATTTTAGATCCTATAGTGAGTTTGAAA
TTTGAAGAGATTTTTTTACATTTGCTTTTAAATAAGAATATTTATTTTATTAGTTTTTTATCAGGAATTTTAAAAGAATT
TCGCCTTGATCTTTCCCAGCTTTTTGAGTATTGTGGTAGAGAATTTTTAAGCGTAAATGAAATGTCTAATTTTGCGAAAT
TAGATTTAGCAACTTTTTCTAAAGAATTTAAGAAATGTTTTGGACAAAGTCCTAAAAAATGGTTAGATGAAAAAAGGTTG
CAAAAAGCAAAGATTTTACTTAAATTTTCTAAAAAAAATATCAATGAAATAGCTAATGAGTGCGCTTTTTCTTCGGTAGC
TTGGTTTATTGAAAGATTTAAAGAGAAATATGAGCAAACTCCTAAGCAATATCAAAAAACAAAAAACTTGTATTTTTTAT
CAAAAAACTAG

Upstream 100 bases:

>100_bases
ATTTTAAAGATATAAATGTAGTAGGTGTTTGCATGCGTGAAATTTTAATGAAAGAAAAAGATCTTAAAAAGTATCTTTTA
GAATGTAGGCAAAATTTACG

Downstream 100 bases:

>100_bases
CACATTTTTTTTATCTAAATAAATATAATTCAATGAAAATATTTTTAAATAAAGGAGAAAATATGAAAAAATATGTTTTA
AGTTTAGCGCTTCTTGGAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator ExsA; Type III Secretionrmoregulatory Protein

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVGSHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSY
TLSNVGLSKGVYEAYLFFFDNAFLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLATFSKEFKKCFGQSPKKWLDEKRL
QKAKILLKFSKKNINEIANECAFSSVAWFIERFKEKYEQTPKQYQKTKNLYFLSKN

Sequences:

>Translated_296_residues
MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVGSHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSY
TLSNVGLSKGVYEAYLFFFDNAFLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLATFSKEFKKCFGQSPKKWLDEKRL
QKAKILLKFSKKNINEIANECAFSSVAWFIERFKEKYEQTPKQYQKTKNLYFLSKN
>Mature_296_residues
MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVGSHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSY
TLSNVGLSKGVYEAYLFFFDNAFLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLATFSKEFKKCFGQSPKKWLDEKRL
QKAKILLKFSKKNINEIANECAFSSVAWFIERFKEKYEQTPKQYQKTKNLYFLSKN

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35011; Mature: 35011

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVGSHLLTFVRKGYKILHT
CCCCCCCHHHHHHHCCCCHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHEEE
ASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNAFLIELIYKYKDFFKLDQK
CCCCCCCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLKFEEIFLHLLLNKNIYFISFL
HCCEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLATFSKEFKKCFGQSPKKWLDEKRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QKAKILLKFSKKNINEIANECAFSSVAWFIERFKEKYEQTPKQYQKTKNLYFLSKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEEEECC
>Mature Secondary Structure
MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVGSHLLTFVRKGYKILHT
CCCCCCCHHHHHHHCCCCHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHEEE
ASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNAFLIELIYKYKDFFKLDQK
CCCCCCCCCEEEEEEECCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLKFEEIFLHLLLNKNIYFISFL
HCCEEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLATFSKEFKKCFGQSPKKWLDEKRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QKAKILLKFSKKNINEIANECAFSSVAWFIERFKEKYEQTPKQYQKTKNLYFLSKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA