| Definition | Campylobacter jejuni RM1221, complete genome. |
|---|---|
| Accession | NC_003912 |
| Length | 1,777,831 |
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The map label for this gene is pheT [H]
Identifier: 57237725
GI number: 57237725
Start: 914297
End: 916618
Strand: Reverse
Name: pheT [H]
Synonym: CJE0975
Alternate gene names: 57237725
Gene position: 916618-914297 (Counterclockwise)
Preceding gene: 57237726
Following gene: 57237724
Centisome position: 51.56
GC content: 28.38
Gene sequence:
>2322_bases ATGATAATTACTAAAAGTTGGTTGAATGATTGGTTAGAACTTGAAGAAATAAGTTCAGATAAAATAGCTAAAACTTTAAA CTCTATAGGTATAGAAGTTGATAGGGTTGGCGCTTTAAAGGCTCCAGATAAAGTTGTTGTAGGCTATGTTAAGGAAAAAA TTAAACATGAAAATTCAGATAAATTAAGCATTTGTCAAGTTGATATCGGAAGTGAAACCTTGCAAATTGTCTGCGGTGCT GCGAATGTTGATGCAGGACAATTTGTAGCTGTTGCAACTAAAGGTGCTATCATGCCAAACGGTATGGAAATAAAAGAAGC AAAATTGCGAGGAGTGGATTCTTGTGGTATGCTTTGTTCTAGTTTAGAACTGGGTTTTGAAAAAATCAATGAAGGAATTA TGCTTTTAGATGAGAGTATAGGGAAATTAGAACTTGGGAGACCTTTAAATACTTATGAAATTTTTAATGATGAGCTAATA GAAGTGGAACTTACTCCTAATAGGGGTGATTGTTTAAGTATTTATGGTATAGCTCGTGATTTAGCCGCAGCTTTAAATTT AAATTTAAAAGAACCAAAACCATTTAAAGAAAGTGAAAATGTTTTAGGTATCGGTAGAATTTTGCGCTTAGCAGCTGAGA AAGAACTTAATGGGCTTTATAATTATCGAGCCATAGGGCTAAAAGAAGAAATTCAAACAAATTTATTGCTTAGTTTAAGA CTTGCTCAAATTGAAGGTTTGGGAAAAAATTCCATAGAAAATTTATTAAATTATGCAACGCATTCAACTGGTGTTCTTTT TAATGCTTATGATTTAAGTAGTTTTTCTGAAAAAGATGAAGAATTTATCATTAATTTAAGCAAGCAAGTGCATGGAGAAA CAAAGGTATCTTACAAAGATAAACTTTTAAGCTTTAGCGGAATTTTCCAAAATAATGAAAGTAGATGTAAAGATGATTCT AAAATAATTATTATTGAGGCTAATTATACCGATCCATTGGTAATTGCAGATGCTAAAATATATCATAAAGATCAAGATGA AAAAATGCTTTATAGAAGTTTTAGGGGAAGTGAACCTAAATTAAATTTAGGAATGGATTTTTTGCTTGGTATTTTTGAGC ATATTCCAAATCTTGTTATTTATAGTTCTTCTCAACAAATTTTAACCGACAAAGAATTACCAATCATACCAATAAGTATT GAAGGTATTAGCGATATAATAGGACAAAATGTTGATAAAGATGAAGTATTAAAAATATTAAAGAAATTAGGTTTTGAGCT CATACTTTCAGGTGAAGGGCTTATAAATGTTAAAGCACCTTTACATCGTCCTGATATTAAAAATTTATCAGATATTTGCG AGGAAGTTGTAAGAATTATAGGTATTGATAATATTGCTTCCAAGGGTTTAGAATTTATAGAAAAAAATCGTTTAAATTCT GCATATAAAAATTATATTGAGTTTTTAAATTTAAGAAAAAGAGCAGTAGCTAGTGGTTATTTTGAAAGCTTACATTATGT TTTGGATAATGGAGAAGAACTTAAAAGATTAGGTTTTGACTCTGTTAAATTAAAACTAATCAATCCAATTACAGCAGAAC TTAATACTTTAAGAACAACCCTTTTAAATCATTTGTTAAATGCAGCAAGTTTAAATGCAAAAAATTCTAAAAAAATTATT AAACTTTTTGAATTAGGGGCTGTTTTCAATGTTAATAATCAAGAATTAAATCGTATTGCATTTATCCATTCTGGCTTAAA AGAAGAAGCTAAAATTTCCAACAAGGCCAAACCTGAATCGGTGCAATTTTATGATTTTCTTTTAGATATTAAAAATATTA TAGGTGATTTTAAACTAAAATCATCAAAATATAATATTTTAAGCCCTTATGAACAAGCAGATATTTATCTATCGGATATT AAAGTAGGTTTTATAGGCCGTTTGCATTTAAAAATAGAAAATGAGAGAGATTTACCAAAAACATATATTTGCGAACTTGA TTTAGATTTAATCAGGCAAGATTTTAAAATAGCTAAGCCTTACTCCAAATTCCCAGCTATCACTAGAGATCTTAGCGTGT TAATACCTAAAGGTTTTGAATACAATCAGATTAAAAATTGTATCGAAGAATTGAATTTAGAAATACTTGAAAATTTTCGT TTAGTTGATATTTATAGTGATGAAAACCTTAAAGAATTTTATAGCATTACTATAAGTTTTTCTTTTAGGGATATAAATAA AACTCTAGAAGATAATCAAGTGAATGAATGTATGGATAAAATTTTAAATACTCTTAAAAATTTGGGTCTTGATTTAAGAT GA
Upstream 100 bases:
>100_bases CTTTTGGATTGGGAGTAGAACGTTTTGCAATGCTTTTGCATCAAATTCCAGATTTAAGATCTTTATTTGAAGGTGATTTG AGATTATTGGAGCAGTTTAG
Downstream 100 bases:
>100_bases AAATTTACAAATTGCAAACCCCTGTAAATGCTATACTTGAAAATATAGCAGCAGATAAAAGCATATCTCATCGTTTTGCT ATATTTTCGCTTTTAACACA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 773; Mature: 773
Protein sequence:
>773_residues MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDKVVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGA ANVDAGQFVAVATKGAIMPNGMEIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNGLYNYRAIGLKEEIQTNLLLSLR LAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFSEKDEEFIINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDS KIIIIEANYTDPLVIADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEHIPNLVIYSSSQQILTDKELPIIPISI EGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLSDICEEVVRIIGIDNIASKGLEFIEKNRLNS AYKNYIEFLNLRKRAVASGYFESLHYVLDNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKII KLFELGAVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKYNILSPYEQADIYLSDI KVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYSKFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFR LVDIYSDENLKEFYSITISFSFRDINKTLEDNQVNECMDKILNTLKNLGLDLR
Sequences:
>Translated_773_residues MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDKVVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGA ANVDAGQFVAVATKGAIMPNGMEIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNGLYNYRAIGLKEEIQTNLLLSLR LAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFSEKDEEFIINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDS KIIIIEANYTDPLVIADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEHIPNLVIYSSSQQILTDKELPIIPISI EGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLSDICEEVVRIIGIDNIASKGLEFIEKNRLNS AYKNYIEFLNLRKRAVASGYFESLHYVLDNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKII KLFELGAVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKYNILSPYEQADIYLSDI KVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYSKFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFR LVDIYSDENLKEFYSITISFSFRDINKTLEDNQVNECMDKILNTLKNLGLDLR >Mature_773_residues MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDKVVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGA ANVDAGQFVAVATKGAIMPNGMEIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNGLYNYRAIGLKEEIQTNLLLSLR LAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFSEKDEEFIINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDS KIIIIEANYTDPLVIADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEHIPNLVIYSSSQQILTDKELPIIPISI EGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLSDICEEVVRIIGIDNIASKGLEFIEKNRLNS AYKNYIEFLNLRKRAVASGYFESLHYVLDNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKII KLFELGAVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKYNILSPYEQADIYLSDI KVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYSKFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFR LVDIYSDENLKEFYSITISFSFRDINKTLEDNQVNECMDKILNTLKNLGLDLR
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=805, Percent_Identity=27.3291925465839, Blast_Score=230, Evalue=3e-61,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR003583 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 87284; Mature: 87284
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDKVVVGYVKEKIKHENSD CEEEHHHHHHHHHHHHCCHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHCCCCCC KLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGMEIKEAKLRGVDSCGMLCS CEEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHH SLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELIEVELTPNRGDCLSIYGIARD HHHHHHHHHCCCEEEEECCCCCEECCCCCCHHEECCCCEEEEEECCCCCCEEEHHHHHHH LAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNGLYNYRAIGLKEEIQTNLLLSLR HHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHH LAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFSEKDEEFIINLSKQVHGETKVSYKD HHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHEEEHHHHHCCCCCCCHHH KLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLVIADAKIYHKDQDEKMLYRSFRGSEPK HHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCCEEECCCHHHHHHHHHCCCCCC LNLGMDFLLGIFEHIPNLVIYSSSQQILTDKELPIIPISIEGISDIIGQNVDKDEVLKIL CCCCHHHHHHHHHHCCCEEEECCCCCEECCCCCCEEEEEECCHHHHHCCCCCHHHHHHHH KKLGFELILSGEGLINVKAPLHRPDIKNLSDICEEVVRIIGIDNIASKGLEFIEKNRLNS HHCCCEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AYKNYIEFLNLRKRAVASGYFESLHYVLDNGEELKRLGFDSVKLKLINPITAELNTLRTT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEECCHHHHHHHHHHH LLNHLLNAASLNAKNSKKIIKLFELGAVFNVNNQELNRIAFIHSGLKEEAKISNKAKPES HHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHHCCCCCCCC VQFYDFLLDIKNIIGDFKLKSSKYNILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPK HHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHCCEEEEEEEEEEEEEEEEEECCCCCCCC TYICELDLDLIRQDFKIAKPYSKFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFR EEEEECCHHHHHHHHHHCCCHHHCCHHHCCHHEEECCCCCHHHHHHHHHHHCHHHHCCEE LVDIYSDENLKEFYSITISFSFRDINKTLEDNQVNECMDKILNTLKNLGLDLR EEEEECCCCCCEEEEEEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDKVVVGYVKEKIKHENSD CEEEHHHHHHHHHHHHCCHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHCCCCCC KLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGMEIKEAKLRGVDSCGMLCS CEEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHH SLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELIEVELTPNRGDCLSIYGIARD HHHHHHHHHCCCEEEEECCCCCEECCCCCCHHEECCCCEEEEEECCCCCCEEEHHHHHHH LAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNGLYNYRAIGLKEEIQTNLLLSLR HHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHH LAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFSEKDEEFIINLSKQVHGETKVSYKD HHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHEEEHHHHHCCCCCCCHHH KLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLVIADAKIYHKDQDEKMLYRSFRGSEPK HHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCCEEECCCHHHHHHHHHCCCCCC LNLGMDFLLGIFEHIPNLVIYSSSQQILTDKELPIIPISIEGISDIIGQNVDKDEVLKIL CCCCHHHHHHHHHHCCCEEEECCCCCEECCCCCCEEEEEECCHHHHHCCCCCHHHHHHHH KKLGFELILSGEGLINVKAPLHRPDIKNLSDICEEVVRIIGIDNIASKGLEFIEKNRLNS HHCCCEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AYKNYIEFLNLRKRAVASGYFESLHYVLDNGEELKRLGFDSVKLKLINPITAELNTLRTT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEECCHHHHHHHHHHH LLNHLLNAASLNAKNSKKIIKLFELGAVFNVNNQELNRIAFIHSGLKEEAKISNKAKPES HHHHHHHHHHCCCCCCHHHHHHHHCCCEEECCHHHHHHHHHHHHCCHHHHHHCCCCCCCC VQFYDFLLDIKNIIGDFKLKSSKYNILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPK HHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHCCEEEEEEEEEEEEEEEEEECCCCCCCC TYICELDLDLIRQDFKIAKPYSKFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFR EEEEECCHHHHHHHHHHCCCHHHCCHHHCCHHEEECCCCCHHHHHHHHHHHCHHHHCCEE LVDIYSDENLKEFYSITISFSFRDINKTLEDNQVNECMDKILNTLKNLGLDLR EEEEECCCCCCEEEEEEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10688204 [H]