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The map label for this gene is rplY

Identifier: 57237362

GI number: 57237362

Start: 317935

End: 318471

Strand: Direct

Name: rplY

Synonym: CJE0356

Alternate gene names: 57237362

Gene position: 317935-318471 (Clockwise)

Preceding gene: 57237358

Following gene: 57237363

Centisome position: 17.88

GC content: 32.59

Gene sequence:

>537_bases
ATGTTAGAAGGTATCGTTAGAGAGAGTATCGGTAGAAAAGCTGCTAAAGCTTTAAAAAGAGATGGTTATCTAATCGCAAA
CATCTATGGAAAAGGATTAGAAAACATCAATGCCGCTTTTAAAGTAAATGAGTTTATTAAGGAAGTTCGTAAAAAAACTA
CTTTAATTTTTGATGTAAAAGTAGGTTCTCAAACTTTAAGCGTTGTAGTTGTGGATTATCAAAAAGATCCTGTAACTGCA
GAACTTAAACATGTGGATTTAAAAGTTGCACAAAAAGGTGTGATTTCTAAATACATGGTTCCAGTTAAAATCACAGGAAC
AGCTATAGGTCTTAAAAATAAAGGTGTTTTAATCCAATCAAAAAGAAGATTAAAAGTAAAATGTGCAGCTGAAAATTTAC
CAAATTTTTTCGAACTTGATGTAAGTAAACTTGATGTGGGTGATGCTTTACTTGTTCGTGATATTGTAGTTCCTGCGGGA
GTAACTATGATTGATGCTGATAGAGTAGCGGTTGTAGGTGTAGAAAAAGCTAGATGA

Upstream 100 bases:

>100_bases
CAAATTATATCTTAAAGAAATTAAAAGAAGCTATAAATTTACTTTTCCATAAGCCAAAATTAGATATAATCAAAGCTCAT
TTTTTAAGAAAGGACAAAAG

Downstream 100 bases:

>100_bases
TTTTAGTCGTAGGGCTTGGCAATATAGGCGTAGAGTATGAAAATACCCGCCATAATGTCGGTTTTATGCTAATTGACTTG
CTTTTAAAAGAAAGCAATTT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNEFIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTA
ELKHVDLKVAQKGVISKYMVPVKITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
VTMIDADRVAVVGVEKAR

Sequences:

>Translated_178_residues
MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNEFIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTA
ELKHVDLKVAQKGVISKYMVPVKITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
VTMIDADRVAVVGVEKAR
>Mature_178_residues
MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNEFIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTA
ELKHVDLKVAQKGVISKYMVPVKITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
VTMIDADRVAVVGVEKAR

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_CAMJ8 (A8FKA0)

Other databases:

- EMBL:   CP000814
- RefSeq:   YP_001481864.1
- ProteinModelPortal:   A8FKA0
- SMR:   A8FKA0
- STRING:   A8FKA0
- GeneID:   5616952
- GenomeReviews:   CP000814_GR
- KEGG:   cju:C8J_0288
- eggNOG:   COG1825
- HOGENOM:   HBG731986
- OMA:   ELIMKKG
- ProtClustDB:   PRK05618
- BioCyc:   CJEJ407148:C8J_0288-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 19461; Mature: 19461

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNEFIKEVRKKTTLIFDVK
CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEEE
VGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPVKITGTAIGLKNKGVLIQS
ECCCEEEEEEEEECCCCCEEEHHHHHHHHHHCCCHHHEEEEEEEEEEEEEECCCCEEEEC
KRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAGVTMIDADRVAVVGVEKAR
CCEEEEEEECCCCCCEEEEEHHHCCCCCHHHHHHHHHCCCCEEEECCCEEEEEEECCC
>Mature Secondary Structure
MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNEFIKEVRKKTTLIFDVK
CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEEE
VGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPVKITGTAIGLKNKGVLIQS
ECCCEEEEEEEEECCCCCEEEHHHHHHHHHHCCCHHHEEEEEEEEEEEEEECCCCEEEEC
KRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAGVTMIDADRVAVVGVEKAR
CCEEEEEEECCCCCCEEEEEHHHCCCCCHHHHHHHHHCCCCEEEECCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA