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The map label for this gene is ygdL [H]

Identifier: 57237346

GI number: 57237346

Start: 306146

End: 306796

Strand: Direct

Name: ygdL [H]

Synonym: CJE0340

Alternate gene names: 57237346

Gene position: 306146-306796 (Clockwise)

Preceding gene: 57237345

Following gene: 57237350

Centisome position: 17.22

GC content: 33.49

Gene sequence:

>651_bases
ATGAATGATAGATTTACACGTATAAAATGGCTAGTTGGAGAAGAAAAATTTCAAAAAATTTCACAAACAAAAGTTTTGGT
TTGCGGACTTGGTGGAGTGGGTGGAATTTGCGTTGATGCGCTTTATCGTAGCGGTTTTCAAAATCTTACTTTAATCGATG
CGGATAAATTTGAAATCACCAATCAAAACCGCCAAATTCATAGTGAAAATTTAGGCGAAGAAAAAGCTAAGGTTTTTGCT
AGAATTTACAATGCTAAGGGTATAGTAAGTAAAATAGACAATGAATTTTTAGCAAATTTTGATTTAAGTGAATTTGATTT
AATCATCGATGCAATTGATGATATCCCTGCAAAAGTAGCACTTGCCAATTTGATCGATTTTAAGCGTCAAATTTTTATCT
CTTCTACAGGTGGGGCTAGAAAGCTTGATCCTACGCGTATAAAAACTACAAGTATATTTAAAACCCACGGAGATGCTTTA
GCAAAAAAATTTCGTTACGAGCTTAGAAAATCAGGTTTTAAAGGAAATTTTGATGTGGTTTTTTCAGATGAGGAAGCGCA
TTGTAAAGATCTTGGATCTTTCATGGGTGTGACTGCATCTTTTGGTTTAGCTTTAGCAAGTTTAGCATTAAGAAAAGTTC
TTGCTAGATAA

Upstream 100 bases:

>100_bases
GCCTTACTTAAAAAAGGCTACGCTACAATAACGCCTATAATGCTGGATCTTACAGCTTATGAAAGAATGAAAAAAGTTAA
AAAATGGTTAAAGGCAAATG

Downstream 100 bases:

>100_bases
GATTGAAATTTAAATATTTATCTTAGATAAATGAATTTATCTAAGATAGAAAAAATTACAAAAATAGTTAGATATTAGAA
AATAGCTCCGTGTTTTTCAT

Product: thiF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYRSGFQNLTLIDADKFEITNQNRQIHSENLGEEKAKVFA
RIYNAKGIVSKIDNEFLANFDLSEFDLIIDAIDDIPAKVALANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDAL
AKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR

Sequences:

>Translated_216_residues
MNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYRSGFQNLTLIDADKFEITNQNRQIHSENLGEEKAKVFA
RIYNAKGIVSKIDNEFLANFDLSEFDLIIDAIDDIPAKVALANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDAL
AKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR
>Mature_216_residues
MNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYRSGFQNLTLIDADKFEITNQNRQIHSENLGEEKAKVFA
RIYNAKGIVSKIDNEFLANFDLSEFDLIIDAIDDIPAKVALANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDAL
AKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=252, Percent_Identity=31.7460317460317, Blast_Score=105, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6321790, Length=241, Percent_Identity=27.8008298755187, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 24049; Mature: 24049

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYRSGFQNLTLIDADKFEIT
CCCCHHHHHHHHCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCEEEC
NQNRQIHSENLGEEKAKVFARIYNAKGIVSKIDNEFLANFDLSEFDLIIDAIDDIPAKVA
CCCCEECHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH
LANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDALAKKFRYELRKSGFKGNFDVV
HHHHHHHHHHEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
FSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYRSGFQNLTLIDADKFEIT
CCCCHHHHHHHHCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCEEEC
NQNRQIHSENLGEEKAKVFARIYNAKGIVSKIDNEFLANFDLSEFDLIIDAIDDIPAKVA
CCCCEECHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH
LANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDALAKKFRYELRKSGFKGNFDVV
HHHHHHHHHHEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
FSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]