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The map label for this gene is yccA [C]

Identifier: 57237296

GI number: 57237296

Start: 253783

End: 254478

Strand: Reverse

Name: yccA [C]

Synonym: CJE0287

Alternate gene names: 57237296

Gene position: 254478-253783 (Counterclockwise)

Preceding gene: 57237299

Following gene: 57237295

Centisome position: 14.31

GC content: 31.61

Gene sequence:

>696_bases
ATGAGTCTTTATGATAGAGACTACTCAAGATCAAAAGAATTTGAAAATACACGTTCAAGCGAATTAAGTATTTTTATTAA
ACAAACTTATCAACTTTTTGCTGCTTCATTATTAGCTGCAACAGTAGGTGCGTATGTAGGAATTTTTGCTTTAGCATCAT
TTTTTATACAATCACAAGTAACTTTTTGGATCCTTTTTGCTGTTGAAATCGGACTTTTATTTGCTTTGCAATGGAAAAAA
AGAGAGGCTCCATTAAATCTTGTTTTACTTTTTGGTTTTACTTTCTGCTCAGGTTTAACTCTTACACCTTTGCTTATTTC
AGTTTTAGCTCTACCAGCTGGAGGAATTATCATCGCTCAAGCTTTTGCTTTAACAACGGTTGCTTTTGCAGGACTTAGCG
TATTTGCTATGAATACAAAAAAAGATTTTACCGTTATGGGTAAAGCTTTATTTATAGTATTAATCGTTATTGTAGCAGCA
TCTTTACTAAACCTTTTCTTCCAAAGCAGTATAGTTAATCTAGCTATTTCAGCAGTAGCTGCAATATTATTTTCATTTTA
CATTCTTTATGATACGCAAAATATTATCCGCGGAAATTATGAAACTCCAATCGAAGGTGCAGTAGCACTTTATCTTGATT
TTGTTAATCTTTTCGTATCTTTACTTAATATCTTAAGAAGCTTCAATAGCAGATAA

Upstream 100 bases:

>100_bases
AATCATAAAGATATTATATAAATTAACTTTTTATTTAGTCTAATATGTTAGATTTCGCTCAAGATTTTAAAAAATCTAAC
AATTTTGCAAGGAGAATTTT

Downstream 100 bases:

>100_bases
ATTTTTGTGGGATTTTTCTCACAAAAACTTTTCAAGTTTCAAAACTTTTCAAGTTTTATTTAGCTAAAATAATCATTTAA
AAATTAACTTTTAGGAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGAYVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKK
REAPLNLVLLFGFTFCSGLTLTPLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLFVSLLNILRSFNSR

Sequences:

>Translated_231_residues
MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGAYVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKK
REAPLNLVLLFGFTFCSGLTLTPLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLFVSLLNILRSFNSR
>Mature_230_residues
SLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGAYVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKR
EAPLNLVLLFGFTFCSGLTLTPLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAAS
LLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLFVSLLNILRSFNSR

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family

Homologues:

Organism=Homo sapiens, GI116812579, Length=210, Percent_Identity=36.1904761904762, Blast_Score=110, Evalue=1e-24,
Organism=Escherichia coli, GI1787205, Length=231, Percent_Identity=35.0649350649351, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1787004, Length=157, Percent_Identity=32.484076433121, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25147532, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24653221, Length=235, Percent_Identity=28.0851063829787, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24653223, Length=235, Percent_Identity=28.0851063829787, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24653227, Length=235, Percent_Identity=28.0851063829787, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI45551091, Length=235, Percent_Identity=28.0851063829787, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI17647735, Length=235, Percent_Identity=28.0851063829787, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24653225, Length=235, Percent_Identity=28.0851063829787, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI19922136, Length=235, Percent_Identity=29.7872340425532, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24653219, Length=232, Percent_Identity=29.7413793103448, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24646768, Length=213, Percent_Identity=27.2300469483568, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24586434, Length=155, Percent_Identity=27.741935483871, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y236_CAMJE (Q9PIQ8)

Other databases:

- EMBL:   AL111168
- PIR:   D81441
- RefSeq:   YP_002343679.1
- GeneID:   904563
- GenomeReviews:   AL111168_GR
- KEGG:   cje:Cj0236c
- HOGENOM:   HBG595196
- OMA:   NAYAENS
- PhylomeDB:   Q9PIQ8
- ProtClustDB:   CLSK872467
- BioCyc:   CJEJ192222:CJ0236C-MONOMER
- InterPro:   IPR006214
- PANTHER:   PTHR23291

Pfam domain/function: PF01027 UPF0005

EC number: NA

Molecular weight: Translated: 25487; Mature: 25356

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbb3d5b4)-; HASH(0xc24c674)-; HASH(0xc94f214)-; HASH(0xc055be8)-; HASH(0xc24be04)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGAYVGIFALASFFIQSQV
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLTPLLISVLALPAGGIIIAQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH
AFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAASLLNLFFQSSIVNLAISAVA
HHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLFVSLLNILRSFNSR
HHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure 
SLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGAYVGIFALASFFIQSQV
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLTPLLISVLALPAGGIIIAQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH
AFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAASLLNLFFQSSIVNLAISAVA
HHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLFVSLLNILRSFNSR
HHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204