Click here to switch to the map view.

The map label for this gene is rimP [H]

Identifier: 57237145

GI number: 57237145

Start: 138827

End: 139249

Strand: Direct

Name: rimP [H]

Synonym: CJE0133

Alternate gene names: 57237145

Gene position: 138827-139249 (Clockwise)

Preceding gene: 57237144

Following gene: 57237146

Centisome position: 7.81

GC content: 30.73

Gene sequence:

>423_bases
ATGAATCTTGAAGCCCTTTGCAAAGAAGCAGGACTTAGTTTTTATGATGATGAGCTAGTAAGTGAAAATGGCAGAAAAAT
TTATAGAATTTATGTACAAAAAGAAGGCGGGGTAAATCTTGATGATTGTGCAAGGCTTAGTGAAATTTTATCGCCTATTT
TTGATGTAGAGTCACCTGTAAATGGAGAGTATTTTTTAGAAGTATCTTCACCAGGACTTGAAAGAAAACTTAGCAAGATA
GAACATTTTGCAAAAAGTATAGGTGAACTTGTGAAGATCACAACCAATGAAAAAGAAAAATTCGAAGCAAAAATCATTGC
TGTAGATGATGAAAATATCACTTTAGAAAATTTAGAAAATAAAGAAAAAACTACTATAAATTTTAATGATATAAAAAAAG
CTAGAACCTTTGTGGAGTGGTGA

Upstream 100 bases:

>100_bases
GGCTGGTATAGGTGTCCGAATTTTCATTTTAAATTTGATGATAGGCTTGAGTATCAAAACCATATGGATGCACTTTTTGA
AAAAATAAAAAAGGATAAAA

Downstream 100 bases:

>100_bases
AAATTTAGAAATATGATTTTTTAATTACCTTTTATATAATTAAATTTAAATATAAACACAAAAAACTATAAAATTTTATA
TTTGTAGGTTAAAAGGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVESPVNGEYFLEVSSPGLERKLSKI
EHFAKSIGELVKITTNEKEKFEAKIIAVDDENITLENLENKEKTTINFNDIKKARTFVEW

Sequences:

>Translated_140_residues
MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVESPVNGEYFLEVSSPGLERKLSKI
EHFAKSIGELVKITTNEKEKFEAKIIAVDDENITLENLENKEKTTINFNDIKKARTFVEW
>Mature_140_residues
MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVESPVNGEYFLEVSSPGLERKLSKI
EHFAKSIGELVKITTNEKEKFEAKIIAVDDENITLENLENKEKTTINFNDIKKARTFVEW

Specific function: Required for maturation of 30S ribosomal subunits [H]

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family [H]

Homologues:

Organism=Escherichia coli, GI226510978, Length=110, Percent_Identity=40.9090909090909, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003728 [H]

Pfam domain/function: PF02576 DUF150 [H]

EC number: NA

Molecular weight: Translated: 16009; Mature: 16009

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVESPV
CCHHHHHHHCCCCCCCHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
NGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFEAKIIAVDDENITLENLEN
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEEECCCCEECCCCCC
KEKTTINFNDIKKARTFVEW
CCCEEECHHHHHHHHHHCCC
>Mature Secondary Structure
MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCARLSEILSPIFDVESPV
CCHHHHHHHCCCCCCCHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
NGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFEAKIIAVDDENITLENLEN
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEEECCCCEECCCCCC
KEKTTINFNDIKKARTFVEW
CCCEEECHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA