Click here to switch to the map view.

The map label for this gene is rbfA

Identifier: 57237144

GI number: 57237144

Start: 138475

End: 138837

Strand: Direct

Name: rbfA

Synonym: CJE0132

Alternate gene names: 57237144

Gene position: 138475-138837 (Clockwise)

Preceding gene: 57237143

Following gene: 57237145

Centisome position: 7.79

GC content: 31.4

Gene sequence:

>363_bases
ATGAACCCAAGTGAGATTAAAAAACTACGCACTGAAAGTATCTTAAAAGAGCTGATCCCTGAAGCTTTAGCAAATTTAGA
TGATGAAAATTTGAAAAATTTGTGTGTAGTGGATGTAGAGTGTAAAAAAGGCAGATACGATGCTTTTGTGTATCTTGATA
AGATGTTTTTTAATGTTCATGAGCAAGAAAAAATTTTATCTTCTTTAAAAAAGGCAAGTAGAGCTTTGCAAAATTACTGC
ATGAGTGAGCAGGGCTGGTATAGGTGTCCGAATTTTCATTTTAAATTTGATGATAGGCTTGAGTATCAAAACCATATGGA
TGCACTTTTTGAAAAAATAAAAAAGGATAAAAATGAATCTTGA

Upstream 100 bases:

>100_bases
CAAAAGGCTATGAATGTGGCGTAGGTATAGAAGGGTGTGATGATATGAGAGTGGGTGATTATATAGAAAGCTATAAAGAA
GTAGAGGAACAAGCAAGTCT

Downstream 100 bases:

>100_bases
AGCCCTTTGCAAAGAAGCAGGACTTAGTTTTTATGATGATGAGCTAGTAAGTGAAAATGGCAGAAAAATTTATAGAATTT
ATGTACAAAAAGAAGGCGGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYC
MSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES

Sequences:

>Translated_120_residues
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYC
MSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES
>Mature_120_residues
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYC
MSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CAMJ8 (A8FJU2)

Other databases:

- EMBL:   CP000814
- RefSeq:   YP_001481706.1
- ProteinModelPortal:   A8FJU2
- STRING:   A8FJU2
- GeneID:   5617666
- GenomeReviews:   CP000814_GR
- KEGG:   cju:C8J_0130
- eggNOG:   COG0858
- HOGENOM:   HBG321089
- OMA:   WFKCPKL
- ProtClustDB:   PRK00521
- BioCyc:   CJEJ407148:C8J_0130-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14303; Mature: 14303

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNVH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
EQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES
HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKGRYDAFVYLDKMFFNVH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
EQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEYQNHMDALFEKIKKDKNES
HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA