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The map label for this gene is pal [H]

Identifier: 57237120

GI number: 57237120

Start: 117738

End: 118235

Strand: Direct

Name: pal [H]

Synonym: CJE0108

Alternate gene names: 57237120

Gene position: 117738-118235 (Clockwise)

Preceding gene: 57237119

Following gene: 57237121

Centisome position: 6.62

GC content: 33.94

Gene sequence:

>498_bases
ATGAAAAAAATTCTTTTTACTTCAATCGCAGCTCTTGCAGTTGTTATTAGTGGTTGTAGCACAAAAAGCACTAGCGTAAG
CGGTGATAGTAGTGTTGATTCAAATCGTGGTTCAGGTGGAAGTGATGGTTGGGATATTGATTCAAAAATTTCTCAACTTA
ATGATACTTTAAATAAAGTATATTTTGATTTTGATAAATTCAACATTCGTCCTGATATGCAAAATGTTGTAAGCACAAAT
GCTAATATTTTTAACACTGAAGTAAGCGGTGTAAGTATTACTGTTGAAGGAAACTGCGATGAGTGGGGAACCGATGAATA
TAACCAAGCTCTAGGTTTAAAAAGAGCAAAAGCTGTAAAAGAAGCTTTAATCGCTAAAGGTGTAAATGCTGATAGAATTG
CTGTTAAAAGCTATGGAGAAACAAATCCTGTGTGTACTGAAAAAACTAAAGCTTGCGATGCGCAAAACAGACGTGCTGAA
TTTAAATTATCAAGATAA

Upstream 100 bases:

>100_bases
AAAATTCAATCAATTGATTGGTAAAAATTTCAATTTTAGGTTAAAATTAATTAAAAATTAGATATAATAATAAGAATTTA
TTAACTTTGAAAGGTCATAA

Downstream 100 bases:

>100_bases
TTAATGAAAAAAATATTCACAGTAGCTCTTCTTGGAGCTACTTTACTTTATGCAGAAAGCTCAGCTTTTGGTGCAGGAGA
TATAACAAGCAATTCTTCTT

Product: peptidoglycan-associated lipoprotein Omp18

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGWDIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTN
ANIFNTEVSGVSITVEGNCDEWGTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
FKLSR

Sequences:

>Translated_165_residues
MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGWDIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTN
ANIFNTEVSGVSITVEGNCDEWGTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
FKLSR
>Mature_165_residues
MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGWDIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTN
ANIFNTEVSGVSITVEGNCDEWGTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
FKLSR

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=168, Percent_Identity=35.7142857142857, Blast_Score=97, Evalue=4e-22,
Organism=Escherichia coli, GI1787191, Length=114, Percent_Identity=34.2105263157895, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI48994946, Length=132, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 17829; Mature: 17829

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGWDIDSKISQLNDTLNKV
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
YFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEWGTDEYNQALGLKRAKAVK
EECCCCCCCCCCHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
EALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAEFKLSR
HHHHHCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCEEECC
>Mature Secondary Structure
MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGWDIDSKISQLNDTLNKV
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
YFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEWGTDEYNQALGLKRAKAVK
EECCCCCCCCCCHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
EALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAEFKLSR
HHHHHCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]