| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228819
Identifier: 21228819
GI number: 21228819
Start: 3247665
End: 3249269
Strand: Reverse
Name: 21228819
Synonym: MM_2717
Alternate gene names: NA
Gene position: 3249269-3247665 (Counterclockwise)
Preceding gene: 21228821
Following gene: 21228818
Centisome position: 79.32
GC content: 40.37
Gene sequence:
>1605_bases ATGGATAAAAAGATTGTACTGATCGGGTTACTTACCGTTTGTATTTTTTCCATTCTTTCAATGACTGCTTCTGCGGCAGA TAACATTGAATGGGTGGAGAAAAAAGATGGAGCAAAACTTTACTGGGGAGAGACGATAAACATAGATGGTTATGATGTAA AAGCAGAAGATTTTAATGAAGAAGGGATGGTTTTTGTCTCCATATCGAAAGATGGGGAAAAACTGAAGACTTCTCCTCTT ACAGCAGGCCTGGAATTTGAATATAATGACGAAATAAAGGTTTATGCCCAGAAAGTGGACCCCAACTATGAAGTCATCAC AAAGGACGGAAAAGAATTCAAGACCGGAAAGTGGAATCCATATGCTGAACTGGATATTCTTTTAAGGGGAAAACCGGGTT TTGACATAGATGTTGAAACTAAAAAGGATACCTATGACTCAAAATTAACAGGTGACAGCAGAATAGATGTAACTATAAAT GTTAAAAACGATGGAGAAGCAAAGGCTCAAAATGTAGTGCTGACTGTTGACACCGCCGGTCTGGAAGTGCTTAATGGAAA AACAAAGTATACATATACGAAAATTCTTAAAGATGAAACCATTGAGCCCATAAGTCTGACGCTCAAAGCCTCCACCCCTT GGGAGGATACTGATTATAACATAAGTGTAAAAACAACCTGTGAAGATATAAGAGGCAAGAAATACGAGCATACCGGATAC AAAATCATAAAAATAGAGAAAAAATGGGATCTTATCGTCTCAAAGAATTTTATAAAAGAACGGCATATGGGAGAAAACGT GCCTGTATCGGTTACAGTCAGGAACAGAGGGCTCTGTGACATAAATAATATCGTACTTAAAGATTCGATTGTTTCAAACA TGCATCTCCAAAAAGATGCCACACTTGAGAAGACATTTTCTCTGAAGGCTGGAGAAACAGCTGAAGACGTCTTCAAGTAT ACTCTTGTTCCGGAAAGACCCGGAGAATATACTTTCCCAAAAACTGTAGCTGCTTTTACCCTTTCAAATGGGCAGAGTGA ACAGGTGGAATCAGATAATTCGGAAAAGATAACCATTTACGGGCCCTATATTGAAATTACGAAATCCGTTGACAGACAGC AGCTAAATTCCGGAGACAAACTTACTGTAACGGTCACTGCAAAGAACACCGGAAATGTTGATGCCAGTGTAACAGTGACC GATACCGTGCCCTCAGAAGCTAAACTCATTAGCGGGGAAACGAGTTTTAAGCAGGTTCTTGAAAGCAACGGTGGCTCGAA AACCATCACGTATATTATGCAGATGAATAAAGAAGGGGAAATCAAAATACCTCCCTGCAAAGCAAATTTCCTGGACCTTG ACAAGTACTCGGGAGAAGTATATTCGGAGTCTCCTGTAGTTAATGTGGGAAAAATAATTACCCTTGAAGGCAGCAGCCCA CAACCTGAAGGGTCAACCAGCTCCAATGAAGAAAAAGACGAAACTTCGGATCCGAGCACTGGCGGCACGGAAGAAGATTA TGAAGATACACCCGGGTTTGGATTCTTCCTGGCTGTAGCAGGGATTTTAATGGGAACAGGGTTCATTATGAAAAAGAAAG CATGA
Upstream 100 bases:
>100_bases GTTGTAATATTAAAAAGCCGCAAAATTTGCAGAAGCGCAAAATATACGTTTCAGGTGCCCGAATCCGAGAGATTCAGTAT CAAAATCAAGGAAGGAGACC
Downstream 100 bases:
>100_bases AAAGCAAGAATTAAATATAGTCAGGATTATTCCGACCTTCCGGATAATCCGTTTTTATGACCTTCACACTTCCCCTTGTA CCGGGAAGGTGATTTATTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MDKKIVLIGLLTVCIFSILSMTASAADNIEWVEKKDGAKLYWGETINIDGYDVKAEDFNEEGMVFVSISKDGEKLKTSPL TAGLEFEYNDEIKVYAQKVDPNYEVITKDGKEFKTGKWNPYAELDILLRGKPGFDIDVETKKDTYDSKLTGDSRIDVTIN VKNDGEAKAQNVVLTVDTAGLEVLNGKTKYTYTKILKDETIEPISLTLKASTPWEDTDYNISVKTTCEDIRGKKYEHTGY KIIKIEKKWDLIVSKNFIKERHMGENVPVSVTVRNRGLCDINNIVLKDSIVSNMHLQKDATLEKTFSLKAGETAEDVFKY TLVPERPGEYTFPKTVAAFTLSNGQSEQVESDNSEKITIYGPYIEITKSVDRQQLNSGDKLTVTVTAKNTGNVDASVTVT DTVPSEAKLISGETSFKQVLESNGGSKTITYIMQMNKEGEIKIPPCKANFLDLDKYSGEVYSESPVVNVGKIITLEGSSP QPEGSTSSNEEKDETSDPSTGGTEEDYEDTPGFGFFLAVAGILMGTGFIMKKKA
Sequences:
>Translated_534_residues MDKKIVLIGLLTVCIFSILSMTASAADNIEWVEKKDGAKLYWGETINIDGYDVKAEDFNEEGMVFVSISKDGEKLKTSPL TAGLEFEYNDEIKVYAQKVDPNYEVITKDGKEFKTGKWNPYAELDILLRGKPGFDIDVETKKDTYDSKLTGDSRIDVTIN VKNDGEAKAQNVVLTVDTAGLEVLNGKTKYTYTKILKDETIEPISLTLKASTPWEDTDYNISVKTTCEDIRGKKYEHTGY KIIKIEKKWDLIVSKNFIKERHMGENVPVSVTVRNRGLCDINNIVLKDSIVSNMHLQKDATLEKTFSLKAGETAEDVFKY TLVPERPGEYTFPKTVAAFTLSNGQSEQVESDNSEKITIYGPYIEITKSVDRQQLNSGDKLTVTVTAKNTGNVDASVTVT DTVPSEAKLISGETSFKQVLESNGGSKTITYIMQMNKEGEIKIPPCKANFLDLDKYSGEVYSESPVVNVGKIITLEGSSP QPEGSTSSNEEKDETSDPSTGGTEEDYEDTPGFGFFLAVAGILMGTGFIMKKKA >Mature_534_residues MDKKIVLIGLLTVCIFSILSMTASAADNIEWVEKKDGAKLYWGETINIDGYDVKAEDFNEEGMVFVSISKDGEKLKTSPL TAGLEFEYNDEIKVYAQKVDPNYEVITKDGKEFKTGKWNPYAELDILLRGKPGFDIDVETKKDTYDSKLTGDSRIDVTIN VKNDGEAKAQNVVLTVDTAGLEVLNGKTKYTYTKILKDETIEPISLTLKASTPWEDTDYNISVKTTCEDIRGKKYEHTGY KIIKIEKKWDLIVSKNFIKERHMGENVPVSVTVRNRGLCDINNIVLKDSIVSNMHLQKDATLEKTFSLKAGETAEDVFKY TLVPERPGEYTFPKTVAAFTLSNGQSEQVESDNSEKITIYGPYIEITKSVDRQQLNSGDKLTVTVTAKNTGNVDASVTVT DTVPSEAKLISGETSFKQVLESNGGSKTITYIMQMNKEGEIKIPPCKANFLDLDKYSGEVYSESPVVNVGKIITLEGSSP QPEGSTSSNEEKDETSDPSTGGTEEDYEDTPGFGFFLAVAGILMGTGFIMKKKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59072; Mature: 59072
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKIVLIGLLTVCIFSILSMTASAADNIEWVEKKDGAKLYWGETINIDGYDVKAEDFNE CCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCEEECCCEEEECCCCCC EGMVFVSISKDGEKLKTSPLTAGLEFEYNDEIKVYAQKVDPNYEVITKDGKEFKTGKWNP CCEEEEEECCCCCEEECCCCEECEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCC YAELDILLRGKPGFDIDVETKKDTYDSKLTGDSRIDVTINVKNDGEAKAQNVVLTVDTAG CEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC LEVLNGKTKYTYTKILKDETIEPISLTLKASTPWEDTDYNISVKTTCEDIRGKKYEHTGY EEEECCCCCEEEEEEHHCCCCCCEEEEEEECCCCCCCCEEEEEEEEHHHHCCCEEECCCE KIIKIEKKWDLIVSKNFIKERHMGENVPVSVTVRNRGLCDINNIVLKDSIVSNMHLQKDA EEEEEECCEEEEEEHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECHHHHCEEECCCC TLEKTFSLKAGETAEDVFKYTLVPERPGEYTFPKTVAAFTLSNGQSEQVESDNSEKITIY CHHHEEEECCCCCHHHEEEEEECCCCCCCCCCCCEEEEEEECCCCCHHCCCCCCCEEEEE GPYIEITKSVDRQQLNSGDKLTVTVTAKNTGNVDASVTVTDTVPSEAKLISGETSFKQVL ECEEEEECHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCEEECCCHHHHHHH ESNGGSKTITYIMQMNKEGEIKIPPCKANFLDLDKYSGEVYSESPVVNVGKIITLEGSSP HCCCCCEEEEEEEEECCCCCEEECCCCCCCEECHHCCCCEECCCCCEECCEEEEEECCCC QPEGSTSSNEEKDETSDPSTGGTEEDYEDTPGFGFFLAVAGILMGTGFIMKKKA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC >Mature Secondary Structure MDKKIVLIGLLTVCIFSILSMTASAADNIEWVEKKDGAKLYWGETINIDGYDVKAEDFNE CCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCEEECCCEEEECCCCCC EGMVFVSISKDGEKLKTSPLTAGLEFEYNDEIKVYAQKVDPNYEVITKDGKEFKTGKWNP CCEEEEEECCCCCEEECCCCEECEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCC YAELDILLRGKPGFDIDVETKKDTYDSKLTGDSRIDVTINVKNDGEAKAQNVVLTVDTAG CEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC LEVLNGKTKYTYTKILKDETIEPISLTLKASTPWEDTDYNISVKTTCEDIRGKKYEHTGY EEEECCCCCEEEEEEHHCCCCCCEEEEEEECCCCCCCCEEEEEEEEHHHHCCCEEECCCE KIIKIEKKWDLIVSKNFIKERHMGENVPVSVTVRNRGLCDINNIVLKDSIVSNMHLQKDA EEEEEECCEEEEEEHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECHHHHCEEECCCC TLEKTFSLKAGETAEDVFKYTLVPERPGEYTFPKTVAAFTLSNGQSEQVESDNSEKITIY CHHHEEEECCCCCHHHEEEEEECCCCCCCCCCCCEEEEEEECCCCCHHCCCCCCCEEEEE GPYIEITKSVDRQQLNSGDKLTVTVTAKNTGNVDASVTVTDTVPSEAKLISGETSFKQVL ECEEEEECHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCEEECCCHHHHHHH ESNGGSKTITYIMQMNKEGEIKIPPCKANFLDLDKYSGEVYSESPVVNVGKIITLEGSSP HCCCCCEEEEEEEEECCCCCEEECCCCCCCEECHHCCCCEECCCCCEECCEEEEEECCCC QPEGSTSSNEEKDETSDPSTGGTEEDYEDTPGFGFFLAVAGILMGTGFIMKKKA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA