| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228709
Identifier: 21228709
GI number: 21228709
Start: 3104448
End: 3104798
Strand: Reverse
Name: 21228709
Synonym: MM_2607
Alternate gene names: NA
Gene position: 3104798-3104448 (Counterclockwise)
Preceding gene: 21228710
Following gene: 21228705
Centisome position: 75.79
GC content: 36.47
Gene sequence:
>351_bases ATGAAAAGGGATGATAGGGTATATCTTAGCCACATCCTCTTATCTACTTCCTTAATTGAAAAATACACAGCGAATTTAAC TGAAGAAGAGTTTCTGTCAAATAGTCTTGTTCAGGATGGTACCATCAGGCAAATTCAGATAATCGGCGAAGCTACTAAAA ATCTATCAAAGCCTTTGAGAGAGAAATATCCGCAAATCCACTGGAGAGGAATAGCAGGTATGAGAGATAAACTGGTTCAC GATTATTTTGGTGTGGATATTGATGCTGTATGGGATACCGTAAAAGAGGATATCCCGACTCTCAAAAAGGTAGTTTTAAA AATTGTTCAGGATCTAAATGAAAAAGCTTAA
Upstream 100 bases:
>100_bases TCTCGGATTATCTGGGAATTAAGGTTGACCTGCTGACTGAAAAATCGATAAGTCCTTACCTGATAGATGGAATAAAAAAA GAGGCTAAAGTGATATCTGA
Downstream 100 bases:
>100_bases TCTTTTTTGCTTTAAGTTAGAAGGGATCTTTTTATCGAGCGCTAGTTAGGGCAGCCCTAAAATGAAAAAGAAAAAAGAGG TATAGCACACAGAGTTCTTG
Product: nucleotidyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 116; Mature: 116
Protein sequence:
>116_residues MKRDDRVYLSHILLSTSLIEKYTANLTEEEFLSNSLVQDGTIRQIQIIGEATKNLSKPLREKYPQIHWRGIAGMRDKLVH DYFGVDIDAVWDTVKEDIPTLKKVVLKIVQDLNEKA
Sequences:
>Translated_116_residues MKRDDRVYLSHILLSTSLIEKYTANLTEEEFLSNSLVQDGTIRQIQIIGEATKNLSKPLREKYPQIHWRGIAGMRDKLVH DYFGVDIDAVWDTVKEDIPTLKKVVLKIVQDLNEKA >Mature_116_residues MKRDDRVYLSHILLSTSLIEKYTANLTEEEFLSNSLVQDGTIRQIQIIGEATKNLSKPLREKYPQIHWRGIAGMRDKLVH DYFGVDIDAVWDTVKEDIPTLKKVVLKIVQDLNEKA
Specific function: Unknown
COG id: COG2361
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0331 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008201 [H]
Pfam domain/function: PF01934 DUF86 [H]
EC number: NA
Molecular weight: Translated: 13410; Mature: 13410
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRDDRVYLSHILLSTSLIEKYTANLTEEEFLSNSLVQDGTIRQIQIIGEATKNLSKPLR CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH EKYPQIHWRGIAGMRDKLVHDYFGVDIDAVWDTVKEDIPTLKKVVLKIVQDLNEKA HHCCCCCHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKRDDRVYLSHILLSTSLIEKYTANLTEEEFLSNSLVQDGTIRQIQIIGEATKNLSKPLR CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH EKYPQIHWRGIAGMRDKLVHDYFGVDIDAVWDTVKEDIPTLKKVVLKIVQDLNEKA HHCCCCCHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]