| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228526
Identifier: 21228526
GI number: 21228526
Start: 2892344
End: 2893501
Strand: Reverse
Name: 21228526
Synonym: MM_2424
Alternate gene names: NA
Gene position: 2893501-2892344 (Counterclockwise)
Preceding gene: 21228527
Following gene: 21228524
Centisome position: 70.64
GC content: 43.61
Gene sequence:
>1158_bases ATGGTAAACACGTTATCCCATATTGGAATTGGTCTGCTTCTTGCCCACGCCCTCGGTCTTAAGGGGAGGAAAAGGCTTGG CCTTGTCCTTCTCTCCATAGTCCCTGACATCGATTATTTTAGCTATTCGTTATTTACGCTTATCAGCGGCAGCGTAAGCC ACGAAGCGAGAAACCAGCTATTTTACCTGCTCGGGCACAGGGAGTTGACACATTCTGTTTTTTTTGCAGTTATTCTTGCA GTTCTTATCTGGATAAAAACCAGAGACAGAACTTATACATTCGGAGGTTTTCTGGCTGTCTTCCTTCACAGCTTCCTGGA CTATACAACAAGCGCAAAAATGCGCCCATTTTACCCTTTCAGCTTAAACGAGTCCGCTCTCAGAGCAATCTATCCTTTCG ACCCCGTGGTAAATGTCATTCCCCTTCTGCCTCTCTTTATTGTAGCTGCGGAATACATTAAGAGCCGTGGCGTAAGAAAA TATAAAAAGAAGCATGCCTGGAATATCAAAGATTTGTATCCGTGGGATTTGAAAATCAGGGGAAAATGGAGTGTTCGGGA CAGAGATGTCTGGGACCGGAGATTAAAAAGGCTGAATATTTTCCACAGCTTTGTGAACAGAAACGAAGACAAATTCTATG CCTCTTTCATCATAGTCCTGCTGATATGGACCACAATGTTTCCGGTGGCAAAAATCTTCCTTATAGACCGCATCTCAAGG ACCGAAGGTACAGAAATAAGTTACAATGATACCTACCCTATATCTACCGGAAAATTCCTGGCAGCGTATCCCGCCGATGA TTCCCGCTATAAACTCCTTGAAATAAGCTACTGGGCAGGAGTAGAAAAGAGCTTTTATGTAGACAGGGTTACCGTTGAAG GAGATGTCCCGGACGCTTCCAGATATGCAGAAAGAGCCGGTAATTTATACAGTAACTCAGTGCCTCAGGCTATCGATTAC CCTGTATATTCAGTATCCGAAAAGGACGGCGCGGTAACCGTAATTTTGAGCGATGCAAGAAATCCTTATGTTAAAAAGTG GCCTTATTTCGACACGGTTTACAGGTTTGTGTTTGACAGGGAAAGTAGAGATTACGAGGTGTACGAAAGCCACTACGGTA GACCGGAAAAAAAGCTTGATAAAAATTATTTTGAGTGA
Upstream 100 bases:
>100_bases GCTTGCATTAATTTACATTAAAATTTTAATACTGGATTCACCAGAATGACAACTATTAAGCGCGTTATAATAGCACGGAA TATAAATTCATGGTAGATAT
Downstream 100 bases:
>100_bases TTTCGGAAGCTCATGGGCATTACAGGGAATTTTTATTAATAATTTACAGAGAATTTTTATTAATAATTTACAGAGAATTT TTATTAATAATTTACAGAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MVNTLSHIGIGLLLAHALGLKGRKRLGLVLLSIVPDIDYFSYSLFTLISGSVSHEARNQLFYLLGHRELTHSVFFAVILA VLIWIKTRDRTYTFGGFLAVFLHSFLDYTTSAKMRPFYPFSLNESALRAIYPFDPVVNVIPLLPLFIVAAEYIKSRGVRK YKKKHAWNIKDLYPWDLKIRGKWSVRDRDVWDRRLKRLNIFHSFVNRNEDKFYASFIIVLLIWTTMFPVAKIFLIDRISR TEGTEISYNDTYPISTGKFLAAYPADDSRYKLLEISYWAGVEKSFYVDRVTVEGDVPDASRYAERAGNLYSNSVPQAIDY PVYSVSEKDGAVTVILSDARNPYVKKWPYFDTVYRFVFDRESRDYEVYESHYGRPEKKLDKNYFE
Sequences:
>Translated_385_residues MVNTLSHIGIGLLLAHALGLKGRKRLGLVLLSIVPDIDYFSYSLFTLISGSVSHEARNQLFYLLGHRELTHSVFFAVILA VLIWIKTRDRTYTFGGFLAVFLHSFLDYTTSAKMRPFYPFSLNESALRAIYPFDPVVNVIPLLPLFIVAAEYIKSRGVRK YKKKHAWNIKDLYPWDLKIRGKWSVRDRDVWDRRLKRLNIFHSFVNRNEDKFYASFIIVLLIWTTMFPVAKIFLIDRISR TEGTEISYNDTYPISTGKFLAAYPADDSRYKLLEISYWAGVEKSFYVDRVTVEGDVPDASRYAERAGNLYSNSVPQAIDY PVYSVSEKDGAVTVILSDARNPYVKKWPYFDTVYRFVFDRESRDYEVYESHYGRPEKKLDKNYFE >Mature_385_residues MVNTLSHIGIGLLLAHALGLKGRKRLGLVLLSIVPDIDYFSYSLFTLISGSVSHEARNQLFYLLGHRELTHSVFFAVILA VLIWIKTRDRTYTFGGFLAVFLHSFLDYTTSAKMRPFYPFSLNESALRAIYPFDPVVNVIPLLPLFIVAAEYIKSRGVRK YKKKHAWNIKDLYPWDLKIRGKWSVRDRDVWDRRLKRLNIFHSFVNRNEDKFYASFIIVLLIWTTMFPVAKIFLIDRISR TEGTEISYNDTYPISTGKFLAAYPADDSRYKLLEISYWAGVEKSFYVDRVTVEGDVPDASRYAERAGNLYSNSVPQAIDY PVYSVSEKDGAVTVILSDARNPYVKKWPYFDTVYRFVFDRESRDYEVYESHYGRPEKKLDKNYFE
Specific function: Unknown
COG id: COG1988
COG function: function code R; Predicted membrane-bound metal-dependent hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44888; Mature: 44888
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNTLSHIGIGLLLAHALGLKGRKRLGLVLLSIVPDIDYFSYSLFTLISGSVSHEARNQL CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCE FYLLGHRELTHSVFFAVILAVLIWIKTRDRTYTFGGFLAVFLHSFLDYTTSAKMRPFYPF EEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCC SLNESALRAIYPFDPVVNVIPLLPLFIVAAEYIKSRGVRKYKKKHAWNIKDLYPWDLKIR CCCHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEE GKWSVRDRDVWDRRLKRLNIFHSFVNRNEDKFYASFIIVLLIWTTMFPVAKIFLIDRISR EEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TEGTEISYNDTYPISTGKFLAAYPADDSRYKLLEISYWAGVEKSFYVDRVTVEGDVPDAS CCCCEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCHH RYAERAGNLYSNSVPQAIDYPVYSVSEKDGAVTVILSDARNPYVKKWPYFDTVYRFVFDR HHHHHCCCCCCCCCCCHHCCCCEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCC ESRDYEVYESHYGRPEKKLDKNYFE CCCCCHHHHHHCCCCHHHHCCCCCC >Mature Secondary Structure MVNTLSHIGIGLLLAHALGLKGRKRLGLVLLSIVPDIDYFSYSLFTLISGSVSHEARNQL CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHCE FYLLGHRELTHSVFFAVILAVLIWIKTRDRTYTFGGFLAVFLHSFLDYTTSAKMRPFYPF EEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCC SLNESALRAIYPFDPVVNVIPLLPLFIVAAEYIKSRGVRKYKKKHAWNIKDLYPWDLKIR CCCHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEEE GKWSVRDRDVWDRRLKRLNIFHSFVNRNEDKFYASFIIVLLIWTTMFPVAKIFLIDRISR EEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TEGTEISYNDTYPISTGKFLAAYPADDSRYKLLEISYWAGVEKSFYVDRVTVEGDVPDAS CCCCEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCHH RYAERAGNLYSNSVPQAIDYPVYSVSEKDGAVTVILSDARNPYVKKWPYFDTVYRFVFDR HHHHHCCCCCCCCCCCHHCCCCEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHCC ESRDYEVYESHYGRPEKKLDKNYFE CCCCCHHHHHHCCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA