| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21228509
Identifier: 21228509
GI number: 21228509
Start: 2868971
End: 2869636
Strand: Direct
Name: 21228509
Synonym: MM_2407
Alternate gene names: NA
Gene position: 2868971-2869636 (Clockwise)
Preceding gene: 21228508
Following gene: 21228511
Centisome position: 70.04
GC content: 41.29
Gene sequence:
>666_bases TTGTCTATCTGGTGGCAAGACCAAAAGCAGAGGATGTATGATAGGAATCACATTAGCAGCTATGATTACTATATTGAGTT AACTACAGACTCGACCCTGAGCAATGTTACTCTTTACCTTCCGCTCCCGGTGATAAACAACACATCGTCCGTAGGCACAG ATATTGTAGAGCATCACTTCAATGACTATGATCATTCATGGAAATATACCCTGGTTGATACGGAGCACGGATTAATGCTT TCTATAAAAAATGAGAAAATTGAGCCAAAATACGCTACCCGAAGTAGAGATTCAAAGACGATTCTGTCTCCAAACATGTT TAGCATGACCTTATTCACTAACCAGACCATAGATACAATGAACCCGCTGAGCAATGAAATGGTTCTTATGCCCAAGTACA ACCTTACGCAGAATGTCACCAGAAGACCTTATCCACCGGCATCTGAGATCTTTGATTATGAAAGCAAGATGTATGCCTAC TATGATACATCCTCGGATGCAAACGTCAGCATTTCCGTCTACCTGAACGGACGTAATGGATGGTGGATCGGAGGATGGCT GTATAACAGTTATTGGGAAGACATGGAAATTAAGTTGTCTGGATCTCAGGCTGGATGGACAACAGTAAATGGTCAACTTT TTACAGGAGAAGGAACTTACTATTAA
Upstream 100 bases:
>100_bases TTATGTTTGATTTAGATCCTTCCCAGGGGTGGATAGGTGATGAAATATGAGGACTCGTTACAAAATAATTGTACTATTAA TAATCATTTCTGCTGTGTTG
Downstream 100 bases:
>100_bases TATGAAATGTCGCCTGCTTTTAACGGACGACTTCTCATTACCTGTTATACCCAATTAATTCTAATATTTTACTTGTAGAA TTTGACTTTAAAAAAACGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MSIWWQDQKQRMYDRNHISSYDYYIELTTDSTLSNVTLYLPLPVINNTSSVGTDIVEHHFNDYDHSWKYTLVDTEHGLML SIKNEKIEPKYATRSRDSKTILSPNMFSMTLFTNQTIDTMNPLSNEMVLMPKYNLTQNVTRRPYPPASEIFDYESKMYAY YDTSSDANVSISVYLNGRNGWWIGGWLYNSYWEDMEIKLSGSQAGWTTVNGQLFTGEGTYY
Sequences:
>Translated_221_residues MSIWWQDQKQRMYDRNHISSYDYYIELTTDSTLSNVTLYLPLPVINNTSSVGTDIVEHHFNDYDHSWKYTLVDTEHGLML SIKNEKIEPKYATRSRDSKTILSPNMFSMTLFTNQTIDTMNPLSNEMVLMPKYNLTQNVTRRPYPPASEIFDYESKMYAY YDTSSDANVSISVYLNGRNGWWIGGWLYNSYWEDMEIKLSGSQAGWTTVNGQLFTGEGTYY >Mature_220_residues SIWWQDQKQRMYDRNHISSYDYYIELTTDSTLSNVTLYLPLPVINNTSSVGTDIVEHHFNDYDHSWKYTLVDTEHGLMLS IKNEKIEPKYATRSRDSKTILSPNMFSMTLFTNQTIDTMNPLSNEMVLMPKYNLTQNVTRRPYPPASEIFDYESKMYAYY DTSSDANVSISVYLNGRNGWWIGGWLYNSYWEDMEIKLSGSQAGWTTVNGQLFTGEGTYY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25826; Mature: 25695
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIWWQDQKQRMYDRNHISSYDYYIELTTDSTLSNVTLYLPLPVINNTSSVGTDIVEHHF CCCEECCHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECEECCCCCCCHHHHHHHC NDYDHSWKYTLVDTEHGLMLSIKNEKIEPKYATRSRDSKTILSPNMFSMTLFTNQTIDTM CCCCCCEEEEEEECCCCEEEEEECCCCCCCHHCCCCCCCEEECCCEEEEEEEECCCCCCC NPLSNEMVLMPKYNLTQNVTRRPYPPASEIFDYESKMYAYYDTSSDANVSISVYLNGRNG CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCEEEEEEEEECCCC WWIGGWLYNSYWEDMEIKLSGSQAGWTTVNGQLFTGEGTYY EEEEEEEECCCCCCEEEEEECCCCCEEEECCEEEECCCCCC >Mature Secondary Structure SIWWQDQKQRMYDRNHISSYDYYIELTTDSTLSNVTLYLPLPVINNTSSVGTDIVEHHF CCEECCHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEECEECCCCCCCHHHHHHHC NDYDHSWKYTLVDTEHGLMLSIKNEKIEPKYATRSRDSKTILSPNMFSMTLFTNQTIDTM CCCCCCEEEEEEECCCCEEEEEECCCCCCCHHCCCCCCCEEECCCEEEEEEEECCCCCCC NPLSNEMVLMPKYNLTQNVTRRPYPPASEIFDYESKMYAYYDTSSDANVSISVYLNGRNG CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCEEEEEEEEECCCC WWIGGWLYNSYWEDMEIKLSGSQAGWTTVNGQLFTGEGTYY EEEEEEEECCCCCCEEEEEECCCCCEEEECCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA