| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228492
Identifier: 21228492
GI number: 21228492
Start: 2850591
End: 2851769
Strand: Reverse
Name: 21228492
Synonym: MM_2390
Alternate gene names: NA
Gene position: 2851769-2850591 (Counterclockwise)
Preceding gene: 21228493
Following gene: 21228491
Centisome position: 69.62
GC content: 38.93
Gene sequence:
>1179_bases TTGACTCTGTATCCTTTTCCTTTCACCACAAAAAAACAGGATGCAGAGTCAATGGTAGATTTATTCTCACTCATAAAAGA TTATCTTGTCGATCAGGAAGATGGAATTCGCCATTTAATTACGTGGTTTTTAAATCTCGTAATGGAGGAGGAAGCCCTCC TCCAGGTTGGTGCACAACGTTATGAGAGGACTGATTCTCGTAAAGCCAGTAGAAATGGCTACAAACCCCGAACCCTCCTT ACCAAGTATGGAGAACTTGAATTATTAAAACCTCAATTCCGTGAGTTTCCCTTTGAAACTCAGGTATTTGAGAAATATTC CCGAGTTGAACAGGCCATCTTATCCGCTGTAGCTGAATCTTACCTGCAAGGCGTTTCCACCCGAAGGGTGGATAAGGTCA TGACTGCTTTGGGAGTTGAGGGAATCTCAGCCTCTTCAGTTTCCAGGATTACAAAAGAGCTGGATGAGAAAGTTTCAGAA TTTTTGTCAAAGCCAATAGAACACGAAATTCCTTATTTGTTTATTGATGCTACTTATCTCAAAGTAAGAGATGGACTTCA TTACGAAAATAAAGCTCTCTTTATAGTTTCTGGAGTCAGGGATGATGGTTTTCGCGAGATTCTTGGAGCAAGATTGGCAG ACAGCGAAGACTCTCTGTTCTGGCAAGATCTATTCGAAGACCTGAAAGAAAGAGGGTTAAGAGGTGTCAAGTTAATTGTT TCTGATGGTCATAAAGGAATACAAAAAGCAGTTAGAGAATCCTTTATCGGATCAAGCTGGCAGATGTGCCACGTTCATCT GATAAGGCAAGCTCTAAAAAAGGTTCAAAAAAAGAAGCAAAAAGAAGTAGCAGATAAGATAAAAGAAGCATTGGTAGACC GTCATAAATACAATGATTTGATAAGGGAACTGGATAAGATGGAATATAAAAGTGCAGCTGATACTCTTGAGAATTTTCAG TATGATGTAATGAATTACATGCAGTTTCCACAGAGTCATTGGAGAAAAATAAGGACGACAAATATGATGGAGAGAACTAA CAAGGAGATAAAAAGAAGAACCAAAGTTGTAGGAGCATTCCCTAACCAGGAATCAGTATTGAGACTGGTAGTCTCAATAC TCATTGATATAAATGAAGACTGGATTACTGGAAACAGGTATATAGTAATGGAGCAGTAA
Upstream 100 bases:
>100_bases TTTTTTAATACCTGTTAATCTGAAACACAGGTTTCAATACCCTAATTAGGTGAGACATTAAAAAAAGACGGCAGTGTACC GAAAGTTCTGTAAATTATGA
Downstream 100 bases:
>100_bases TCAAAAAAGAAGACTAAGGGGTATAGAGCAAATTTTACAGAAAATTAGGCACACTGCCAAAAAGACTATTCTCGAATTTG GAGTGACTTATTCACAATCT
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MTLYPFPFTTKKQDAESMVDLFSLIKDYLVDQEDGIRHLITWFLNLVMEEEALLQVGAQRYERTDSRKASRNGYKPRTLL TKYGELELLKPQFREFPFETQVFEKYSRVEQAILSAVAESYLQGVSTRRVDKVMTALGVEGISASSVSRITKELDEKVSE FLSKPIEHEIPYLFIDATYLKVRDGLHYENKALFIVSGVRDDGFREILGARLADSEDSLFWQDLFEDLKERGLRGVKLIV SDGHKGIQKAVRESFIGSSWQMCHVHLIRQALKKVQKKKQKEVADKIKEALVDRHKYNDLIRELDKMEYKSAADTLENFQ YDVMNYMQFPQSHWRKIRTTNMMERTNKEIKRRTKVVGAFPNQESVLRLVVSILIDINEDWITGNRYIVMEQ
Sequences:
>Translated_392_residues MTLYPFPFTTKKQDAESMVDLFSLIKDYLVDQEDGIRHLITWFLNLVMEEEALLQVGAQRYERTDSRKASRNGYKPRTLL TKYGELELLKPQFREFPFETQVFEKYSRVEQAILSAVAESYLQGVSTRRVDKVMTALGVEGISASSVSRITKELDEKVSE FLSKPIEHEIPYLFIDATYLKVRDGLHYENKALFIVSGVRDDGFREILGARLADSEDSLFWQDLFEDLKERGLRGVKLIV SDGHKGIQKAVRESFIGSSWQMCHVHLIRQALKKVQKKKQKEVADKIKEALVDRHKYNDLIRELDKMEYKSAADTLENFQ YDVMNYMQFPQSHWRKIRTTNMMERTNKEIKRRTKVVGAFPNQESVLRLVVSILIDINEDWITGNRYIVMEQ >Mature_391_residues TLYPFPFTTKKQDAESMVDLFSLIKDYLVDQEDGIRHLITWFLNLVMEEEALLQVGAQRYERTDSRKASRNGYKPRTLLT KYGELELLKPQFREFPFETQVFEKYSRVEQAILSAVAESYLQGVSTRRVDKVMTALGVEGISASSVSRITKELDEKVSEF LSKPIEHEIPYLFIDATYLKVRDGLHYENKALFIVSGVRDDGFREILGARLADSEDSLFWQDLFEDLKERGLRGVKLIVS DGHKGIQKAVRESFIGSSWQMCHVHLIRQALKKVQKKKQKEVADKIKEALVDRHKYNDLIRELDKMEYKSAADTLENFQY DVMNYMQFPQSHWRKIRTTNMMERTNKEIKRRTKVVGAFPNQESVLRLVVSILIDINEDWITGNRYIVMEQ
Specific function: Required for the transposition of the insertion element [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 45801; Mature: 45670
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLYPFPFTTKKQDAESMVDLFSLIKDYLVDQEDGIRHLITWFLNLVMEEEALLQVGAQR CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH YERTDSRKASRNGYKPRTLLTKYGELELLKPQFREFPFETQVFEKYSRVEQAILSAVAES HHHHHHHHHHCCCCCCHHHHHHCCCHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH YLQGVSTRRVDKVMTALGVEGISASSVSRITKELDEKVSEFLSKPIEHEIPYLFIDATYL HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEHHHH KVRDGLHYENKALFIVSGVRDDGFREILGARLADSEDSLFWQDLFEDLKERGLRGVKLIV HHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEE SDGHKGIQKAVRESFIGSSWQMCHVHLIRQALKKVQKKKQKEVADKIKEALVDRHKYNDL CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IRELDKMEYKSAADTLENFQYDVMNYMQFPQSHWRKIRTTNMMERTNKEIKRRTKVVGAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PNQESVLRLVVSILIDINEDWITGNRYIVMEQ CCHHHHHHHHHHHHHHCCCCEECCCEEEEECC >Mature Secondary Structure TLYPFPFTTKKQDAESMVDLFSLIKDYLVDQEDGIRHLITWFLNLVMEEEALLQVGAQR CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH YERTDSRKASRNGYKPRTLLTKYGELELLKPQFREFPFETQVFEKYSRVEQAILSAVAES HHHHHHHHHHCCCCCCHHHHHHCCCHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH YLQGVSTRRVDKVMTALGVEGISASSVSRITKELDEKVSEFLSKPIEHEIPYLFIDATYL HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEHHHH KVRDGLHYENKALFIVSGVRDDGFREILGARLADSEDSLFWQDLFEDLKERGLRGVKLIV HHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEE SDGHKGIQKAVRESFIGSSWQMCHVHLIRQALKKVQKKKQKEVADKIKEALVDRHKYNDL CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IRELDKMEYKSAADTLENFQYDVMNYMQFPQSHWRKIRTTNMMERTNKEIKRRTKVVGAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PNQESVLRLVVSILIDINEDWITGNRYIVMEQ CCHHHHHHHHHHHHHHCCCCEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7768811; 11481430 [H]