| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is lhr [C]
Identifier: 21228482
GI number: 21228482
Start: 2838031
End: 2840511
Strand: Direct
Name: lhr [C]
Synonym: MM_2380
Alternate gene names: 21228482
Gene position: 2838031-2840511 (Clockwise)
Preceding gene: 21228481
Following gene: 21228483
Centisome position: 69.28
GC content: 46.35
Gene sequence:
>2481_bases ATGACACTATGGGTCCTCGGTTACGCCGAAAAATCAAAAGTTATAGTAATGACAATAAAAGACCGGTTGAAGCAGCCTCT TTCCGTGGCCGAGCTCCATATAAAGGAAAGTTACAAAGGTCCACGTCCTCATAAAATAAGGGTTCTTACCGGCAAAAAGA ATGAGGAATTTATTCCTCCCCAGCAGTTCATAGAGCTTTTAAGAAGTGCAAACAGGATCATGCTGGCAGAAGGAGGGGAC CCTTCAAATGAAGAAGCATTCCTTGAAATGCTTAAAGGATTTCAGCTCAGTGCAGATAGGGTAAAGATTTGCAAACACTG CTGGATCAATAAGCGTTTCAATTTCGTAAACAGCAAGTCAATCAGGTACCATGATGAACTTATCTGTGAAGACTGCGCAA AAGAAGAACTCCTGCGTGCAGTTCGTTCAGCAGGCGCACAGTACGGAGAAAAATCTGTAGATTTTCTTGAACAGGTTCTC CATAAGACCCGGGACCTTGACCGGACAATCCGTATGCTGAGCCCTGAGAGGCTGGACCCTGAGTTCACAAGGTATGATAC TATCAGGACAACACCTTCAGAAGCCAGAGTCAGGATAAGGGACCTGCCCCTTGCAAAAAAATTCAAAGAAATGCTTCTTG AAAAATCCGAAACCCTGCTTCCTGTGCAGGGACTGTCCATAGAAGCCGGGCTTCTGGAAAGGAAAAACCAGTTTGTGGTT TCTGCAACCGCAACCGGGAAAACTCTTATAGGGGAAATGGCAGGAGTCCAGAACCTTTTGAATAAAAAAGGGAAAATGCT CTACCTTGTCCCTCTTGTAGCCCTGGCAAACCAGAAGTATGACCAGTTCACAGAGCGTTATTCAAAGCTCGGGCTTACAA CTTCCATCAAAATTGGCGCAATTCTCATAAAGACTTCCCAGCGCGTGAAAATGCGGACAAGCCCGAATGCCGATATCATT GTGGGGACCTATGAAGGCGTGGACCACATGCTCCGTTCGGGAAATGCTGATTTTCTCGGTAAAATTGGGACTGTTGTTAT AGACGAGGTACACACCCTTGAAGACCAGGAAAGAGGGCACAGGCTTGACGGGCTTATAGGTAGGCTTCGTTATGTGGCTC CTGAAGCCCAGTTTATCTATCTCTCGGCAACCGTTGCAAATCCTGCAGGATATGCAAAGAAGCTCGGAGCACAGCTTATT CGCTATGAGCACAGGCCTGTTCCTATAGACCGTCATCTCCTTTTCTGCCAGGACAGTGAAAAGGCAAAACTGATCTCCCA GCTTGCAAAAGAAGAGTATTCAATGTTCTCTTCGAAAAATCACAGGGGACAGACAATAGTTTTTACGAATTCCAGGAGAA ACTGCCATAAACTGGCAGGAGCACTTTCTATCCGGGCTTCTCCCTATCACGCAGGGCTTTCTCAGTATGAAAGGAAAAAG GTAGAAACCCTTTTTGCAAAAGGAGAACTTCCTGTAATCGTGACCACTGCCGCCCTTGCAGCTGGAGTGGATTTCCCGGC TTCTCAGGTTATTTTCGAATCCCTTGCAATGGGCATAGACTGGATTTCGGTCCAGGACTTCCTGCAGATGAGCGGAAGAG CAGGCAGACCTGATTATCACGATCGGGGAGTTGTAGTCCTCATGCCGGTTCCGGGGAAATCATATTCAAGCGCACAGTCC GATACTGAAGAAGAGGTTGCAATCAAGTTATTGCAGGGAGAGATGCTTTCTGCAGGGGTTGAATACGGGGAAGCCGAACA GCTTGAAGAGGTGCTTGCTTCAGTTGCAGTTACTTCTTCGGTCCAGGATTTAAGGGGTATCCATTCTCTTATGTTTGGAA GCTTTGACCTCGACAGGCTGGTTTCTCGCCTTCAGAGCTACAGGTTCATTGAGAAAAAGGGAGCCAAAATCTCACTGACC AGGTTCGGAAAAATTATTTCAGCTCATTTCCTTCCGGTTTCCAAAGCTTTCCTTATCCGGGATGCCGTACTTGAGGACAA CAACCCGATAAAAATTGCAACCAACCTGGAATTTTTCGATGCTGCATACTTCAAGTACTCAAACCAGATCGGAAGTTCCC TGCATGTTAATATGCCATCCAGGGTCTTTCAGGGGGCAGCTCTTGATATTGTCTTTGATGGTGAATCCCTGTCCCAGCTC GACATAAAAATAAGGGAACTTATGCTGAACTTTGCCTCTGACTTTTTAACATGCGGATGCAGGGATTCCCCTTATTGCGG ATGCGCAGAGCAGAAATTTTCAGAGAAGATTATCCGGCTGCGTATGGAAGGCAATGATCCCTCCCAGATCATCAGGACCC TTGAAGATAAGTACGGAATATCGGCATATCAGGGAGATGTTTTCGGATACCTGGACAATGCAGTGCGTAACCTTGACGCC ATTGAGCTGATTGCAAGGGTTCATTCGAAAAGGGAAGTTGCAGAAAATGCAAAGAAACTTAAAAAGAAAGTTCAGGGCTG A
Upstream 100 bases:
>100_bases GTTCCGGATGTCAAAATTAAGACGTCAGGTCGGCAGAGAAATGTTATCTTTGAATTCCGAAAGGAAGCTTACTTATACCA TTCACATATCAGGATAAACA
Downstream 100 bases:
>100_bases AATATTTGCAACAGCATTTGCAGACCAGTGATTTATAAGTGATGAAGATAAATATTCCTGTTTATACCGGGAAAAATAGC TTACAAGGATAAAATGCCGG
Product: ATP-dependent DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 826; Mature: 825
Protein sequence:
>826_residues MTLWVLGYAEKSKVIVMTIKDRLKQPLSVAELHIKESYKGPRPHKIRVLTGKKNEEFIPPQQFIELLRSANRIMLAEGGD PSNEEAFLEMLKGFQLSADRVKICKHCWINKRFNFVNSKSIRYHDELICEDCAKEELLRAVRSAGAQYGEKSVDFLEQVL HKTRDLDRTIRMLSPERLDPEFTRYDTIRTTPSEARVRIRDLPLAKKFKEMLLEKSETLLPVQGLSIEAGLLERKNQFVV SATATGKTLIGEMAGVQNLLNKKGKMLYLVPLVALANQKYDQFTERYSKLGLTTSIKIGAILIKTSQRVKMRTSPNADII VGTYEGVDHMLRSGNADFLGKIGTVVIDEVHTLEDQERGHRLDGLIGRLRYVAPEAQFIYLSATVANPAGYAKKLGAQLI RYEHRPVPIDRHLLFCQDSEKAKLISQLAKEEYSMFSSKNHRGQTIVFTNSRRNCHKLAGALSIRASPYHAGLSQYERKK VETLFAKGELPVIVTTAALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYHDRGVVVLMPVPGKSYSSAQS DTEEEVAIKLLQGEMLSAGVEYGEAEQLEEVLASVAVTSSVQDLRGIHSLMFGSFDLDRLVSRLQSYRFIEKKGAKISLT RFGKIISAHFLPVSKAFLIRDAVLEDNNPIKIATNLEFFDAAYFKYSNQIGSSLHVNMPSRVFQGAALDIVFDGESLSQL DIKIRELMLNFASDFLTCGCRDSPYCGCAEQKFSEKIIRLRMEGNDPSQIIRTLEDKYGISAYQGDVFGYLDNAVRNLDA IELIARVHSKREVAENAKKLKKKVQG
Sequences:
>Translated_826_residues MTLWVLGYAEKSKVIVMTIKDRLKQPLSVAELHIKESYKGPRPHKIRVLTGKKNEEFIPPQQFIELLRSANRIMLAEGGD PSNEEAFLEMLKGFQLSADRVKICKHCWINKRFNFVNSKSIRYHDELICEDCAKEELLRAVRSAGAQYGEKSVDFLEQVL HKTRDLDRTIRMLSPERLDPEFTRYDTIRTTPSEARVRIRDLPLAKKFKEMLLEKSETLLPVQGLSIEAGLLERKNQFVV SATATGKTLIGEMAGVQNLLNKKGKMLYLVPLVALANQKYDQFTERYSKLGLTTSIKIGAILIKTSQRVKMRTSPNADII VGTYEGVDHMLRSGNADFLGKIGTVVIDEVHTLEDQERGHRLDGLIGRLRYVAPEAQFIYLSATVANPAGYAKKLGAQLI RYEHRPVPIDRHLLFCQDSEKAKLISQLAKEEYSMFSSKNHRGQTIVFTNSRRNCHKLAGALSIRASPYHAGLSQYERKK VETLFAKGELPVIVTTAALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYHDRGVVVLMPVPGKSYSSAQS DTEEEVAIKLLQGEMLSAGVEYGEAEQLEEVLASVAVTSSVQDLRGIHSLMFGSFDLDRLVSRLQSYRFIEKKGAKISLT RFGKIISAHFLPVSKAFLIRDAVLEDNNPIKIATNLEFFDAAYFKYSNQIGSSLHVNMPSRVFQGAALDIVFDGESLSQL DIKIRELMLNFASDFLTCGCRDSPYCGCAEQKFSEKIIRLRMEGNDPSQIIRTLEDKYGISAYQGDVFGYLDNAVRNLDA IELIARVHSKREVAENAKKLKKKVQG >Mature_825_residues TLWVLGYAEKSKVIVMTIKDRLKQPLSVAELHIKESYKGPRPHKIRVLTGKKNEEFIPPQQFIELLRSANRIMLAEGGDP SNEEAFLEMLKGFQLSADRVKICKHCWINKRFNFVNSKSIRYHDELICEDCAKEELLRAVRSAGAQYGEKSVDFLEQVLH KTRDLDRTIRMLSPERLDPEFTRYDTIRTTPSEARVRIRDLPLAKKFKEMLLEKSETLLPVQGLSIEAGLLERKNQFVVS ATATGKTLIGEMAGVQNLLNKKGKMLYLVPLVALANQKYDQFTERYSKLGLTTSIKIGAILIKTSQRVKMRTSPNADIIV GTYEGVDHMLRSGNADFLGKIGTVVIDEVHTLEDQERGHRLDGLIGRLRYVAPEAQFIYLSATVANPAGYAKKLGAQLIR YEHRPVPIDRHLLFCQDSEKAKLISQLAKEEYSMFSSKNHRGQTIVFTNSRRNCHKLAGALSIRASPYHAGLSQYERKKV ETLFAKGELPVIVTTAALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYHDRGVVVLMPVPGKSYSSAQSD TEEEVAIKLLQGEMLSAGVEYGEAEQLEEVLASVAVTSSVQDLRGIHSLMFGSFDLDRLVSRLQSYRFIEKKGAKISLTR FGKIISAHFLPVSKAFLIRDAVLEDNNPIKIATNLEFFDAAYFKYSNQIGSSLHVNMPSRVFQGAALDIVFDGESLSQLD IKIRELMLNFASDFLTCGCRDSPYCGCAEQKFSEKIIRLRMEGNDPSQIIRTLEDKYGISAYQGDVFGYLDNAVRNLDAI ELIARVHSKREVAENAKKLKKKVQG
Specific function: Unknown
COG id: COG1202
COG function: function code R; Superfamily II helicase, archaea-specific
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI130484567, Length=391, Percent_Identity=26.8542199488491, Blast_Score=119, Evalue=1e-26, Organism=Homo sapiens, GI76880486, Length=371, Percent_Identity=26.6846361185984, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI40217847, Length=465, Percent_Identity=25.8064516129032, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI169218225, Length=465, Percent_Identity=25.8064516129032, Blast_Score=103, Evalue=6e-22, Organism=Homo sapiens, GI110556640, Length=410, Percent_Identity=25.3658536585366, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI139394648, Length=503, Percent_Identity=24.8508946322068, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI193211480, Length=427, Percent_Identity=24.3559718969555, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI67782311, Length=276, Percent_Identity=27.8985507246377, Blast_Score=73, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17537519, Length=377, Percent_Identity=25.9946949602122, Blast_Score=105, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17537127, Length=476, Percent_Identity=23.9495798319328, Blast_Score=104, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17542826, Length=410, Percent_Identity=23.4146341463415, Blast_Score=86, Evalue=5e-17, Organism=Caenorhabditis elegans, GI133930973, Length=192, Percent_Identity=28.6458333333333, Blast_Score=77, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17552866, Length=363, Percent_Identity=24.7933884297521, Blast_Score=75, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322411, Length=431, Percent_Identity=26.4501160092807, Blast_Score=120, Evalue=1e-27, Organism=Saccharomyces cerevisiae, GI6321020, Length=397, Percent_Identity=26.9521410579345, Blast_Score=106, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6321710, Length=364, Percent_Identity=25.2747252747253, Blast_Score=87, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323430, Length=181, Percent_Identity=31.4917127071823, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI28574898, Length=483, Percent_Identity=25.4658385093168, Blast_Score=111, Evalue=3e-24, Organism=Drosophila melanogaster, GI17864608, Length=220, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI17933658, Length=194, Percent_Identity=31.9587628865979, Blast_Score=74, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR014014 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: 3.6.1.-
Molecular weight: Translated: 92780; Mature: 92649
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLWVLGYAEKSKVIVMTIKDRLKQPLSVAELHIKESYKGPRPHKIRVLTGKKNEEFIPP CEEEEEEECCCCCEEEEEEHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCH QQFIELLRSANRIMLAEGGDPSNEEAFLEMLKGFQLSADRVKICKHCWINKRFNFVNSKS HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC IRYHDELICEDCAKEELLRAVRSAGAQYGEKSVDFLEQVLHKTRDLDRTIRMLSPERLDP CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EFTRYDTIRTTPSEARVRIRDLPLAKKFKEMLLEKSETLLPVQGLSIEAGLLERKNQFVV CHHHCCCEECCCHHHCEEEECCCHHHHHHHHHHCCCCCEEEECCCEECHHHHCCCCCEEE SATATGKTLIGEMAGVQNLLNKKGKMLYLVPLVALANQKYDQFTERYSKLGLTTSIKIGA EECCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEEEEE ILIKTSQRVKMRTSPNADIIVGTYEGVDHMLRSGNADFLGKIGTVVIDEVHTLEDQERGH EEEECCCCEEEECCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC RLDGLIGRLRYVAPEAQFIYLSATVANPAGYAKKLGAQLIRYEHRPVPIDRHLLFCQDSE HHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH KAKLISQLAKEEYSMFSSKNHRGQTIVFTNSRRNCHKLAGALSIRASPYHAGLSQYERKK HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHEECCCCHHHHHHHHHHHH VETLFAKGELPVIVTTAALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYH HHHHHHCCCCCEEEEHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC DRGVVVLMPVPGKSYSSAQSDTEEEVAIKLLQGEMLSAGVEYGEAEQLEEVLASVAVTSS CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH VQDLRGIHSLMFGSFDLDRLVSRLQSYRFIEKKGAKISLTRFGKIISAHFLPVSKAFLIR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCHHHHHHHHH DAVLEDNNPIKIATNLEFFDAAYFKYSNQIGSSLHVNMPSRVFQGAALDIVFDGESLSQL HHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCEEEEEECCCCHHHH DIKIRELMLNFASDFLTCGCRDSPYCGCAEQKFSEKIIRLRMEGNDPSQIIRTLEDKYGI HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHCCC SAYQGDVFGYLDNAVRNLDAIELIARVHSKREVAENAKKLKKKVQG CCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TLWVLGYAEKSKVIVMTIKDRLKQPLSVAELHIKESYKGPRPHKIRVLTGKKNEEFIPP EEEEEEECCCCCEEEEEEHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCH QQFIELLRSANRIMLAEGGDPSNEEAFLEMLKGFQLSADRVKICKHCWINKRFNFVNSKS HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC IRYHDELICEDCAKEELLRAVRSAGAQYGEKSVDFLEQVLHKTRDLDRTIRMLSPERLDP CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EFTRYDTIRTTPSEARVRIRDLPLAKKFKEMLLEKSETLLPVQGLSIEAGLLERKNQFVV CHHHCCCEECCCHHHCEEEECCCHHHHHHHHHHCCCCCEEEECCCEECHHHHCCCCCEEE SATATGKTLIGEMAGVQNLLNKKGKMLYLVPLVALANQKYDQFTERYSKLGLTTSIKIGA EECCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEEEEE ILIKTSQRVKMRTSPNADIIVGTYEGVDHMLRSGNADFLGKIGTVVIDEVHTLEDQERGH EEEECCCCEEEECCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC RLDGLIGRLRYVAPEAQFIYLSATVANPAGYAKKLGAQLIRYEHRPVPIDRHLLFCQDSE HHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH KAKLISQLAKEEYSMFSSKNHRGQTIVFTNSRRNCHKLAGALSIRASPYHAGLSQYERKK HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHEECCCCHHHHHHHHHHHH VETLFAKGELPVIVTTAALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYH HHHHHHCCCCCEEEEHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC DRGVVVLMPVPGKSYSSAQSDTEEEVAIKLLQGEMLSAGVEYGEAEQLEEVLASVAVTSS CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH VQDLRGIHSLMFGSFDLDRLVSRLQSYRFIEKKGAKISLTRFGKIISAHFLPVSKAFLIR HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCHHHHHHHHH DAVLEDNNPIKIATNLEFFDAAYFKYSNQIGSSLHVNMPSRVFQGAALDIVFDGESLSQL HHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCEEEEEECCCCHHHH DIKIRELMLNFASDFLTCGCRDSPYCGCAEQKFSEKIIRLRMEGNDPSQIIRTLEDKYGI HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHCCC SAYQGDVFGYLDNAVRNLDAIELIARVHSKREVAENAKKLKKKVQG CCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]