Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is 21228473

Identifier: 21228473

GI number: 21228473

Start: 2828110

End: 2828985

Strand: Direct

Name: 21228473

Synonym: MM_2371

Alternate gene names: NA

Gene position: 2828110-2828985 (Clockwise)

Preceding gene: 21228471

Following gene: 21228477

Centisome position: 69.04

GC content: 44.41

Gene sequence:

>876_bases
ATGGAACTTACTCCGATTCAAAAAGACATTATCATTGCATTAATCAATCTTCAGAGGCAAAAAGATAGGGCAATTAAAGG
GGAAGAAATTGCCGAAGTTATCCAGAGAAACCCCGGGACTGTGCGCAACCAGATGCAGCTGTTAAAAGCCCTCGCCCTGG
TTGAGGGGGTTCCCGGACCAAAAGGAGGATATAAACCTACAGGGGCAGCATATGACGCTTTACGAATCCAGCAGTTAAAA
AACGAGTCCGTAGTTCCTCTCTACAGGAATAACGTGGTAGTTAACGGAGCGACAGCTGCTGAAATCAGCTTTACTACAGT
CAGGAACCCGGATGCCTGCAACGGGGTAGTAAGGGTGATAGGAAATATCAAGGACTTCGTAATGGATGACAAGCTTCAGG
TAGGTCCAACACCTGTAAACCGCCTCATAGTCCGCGGTGAGGTTACGGGAAGGGATGACACCAATAATTCGATCCTTTTT
AACATTACAGAAATGATCTCCCTGCCCAAAAAACATGTCAAACATTATATGAAGTATCCTCCGTTACTTGTGAACCTTAA
CGCCAGCATCCAGGAAGCAACAAGGCTCTTCATCCGAAATAATGTACACGGAGCCCCTGTGGAAGATAAAGGGAAAATAG
TAGGAATAATTACCTATACCGATATTGCACATGCAATCGCGCAGGGGAAACCCAACGTAAAGGTTAAGGACATAATGACA
AAAGAGCTGATAACCGTCGACGGGGACATGCAGCTCTATGATGTGGTAAAACTCTTCCATAAATATAATGTAGGAAGGCT
TATTGTAACAATCAACGGAGTGCCCAAAGGAACTCTGTCTAAAACAGATGTGCTTAATGAGCTTGCGGTTTATTGA

Upstream 100 bases:

>100_bases
TTGTAATCATTAATTATGGCAAATTAAGAGATGCGCTATTTTCAACGTATGGATATTATACTCATCCTGATACAAGGTAT
ATGAAATTGATGGTGATATT

Downstream 100 bases:

>100_bases
AACCGAATTACAGTGTGTTAAATCATAAAGGGAACAGACCTGAGGACTTTATGTCCCAGGCTTTAAAATTCCCCTCTTTT
TTTAAATTCTGTCTTAATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MELTPIQKDIIIALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALALVEGVPGPKGGYKPTGAAYDALRIQQLK
NESVVPLYRNNVVVNGATAAEISFTTVRNPDACNGVVRVIGNIKDFVMDDKLQVGPTPVNRLIVRGEVTGRDDTNNSILF
NITEMISLPKKHVKHYMKYPPLLVNLNASIQEATRLFIRNNVHGAPVEDKGKIVGIITYTDIAHAIAQGKPNVKVKDIMT
KELITVDGDMQLYDVVKLFHKYNVGRLIVTINGVPKGTLSKTDVLNELAVY

Sequences:

>Translated_291_residues
MELTPIQKDIIIALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALALVEGVPGPKGGYKPTGAAYDALRIQQLK
NESVVPLYRNNVVVNGATAAEISFTTVRNPDACNGVVRVIGNIKDFVMDDKLQVGPTPVNRLIVRGEVTGRDDTNNSILF
NITEMISLPKKHVKHYMKYPPLLVNLNASIQEATRLFIRNNVHGAPVEDKGKIVGIITYTDIAHAIAQGKPNVKVKDIMT
KELITVDGDMQLYDVVKLFHKYNVGRLIVTINGVPKGTLSKTDVLNELAVY
>Mature_291_residues
MELTPIQKDIIIALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALALVEGVPGPKGGYKPTGAAYDALRIQQLK
NESVVPLYRNNVVVNGATAAEISFTTVRNPDACNGVVRVIGNIKDFVMDDKLQVGPTPVNRLIVRGEVTGRDDTNNSILF
NITEMISLPKKHVKHYMKYPPLLVNLNASIQEATRLFIRNNVHGAPVEDKGKIVGIITYTDIAHAIAQGKPNVKVKDIMT
KELITVDGDMQLYDVVKLFHKYNVGRLIVTINGVPKGTLSKTDVLNELAVY

Specific function: Unknown

COG id: COG2524

COG function: function code K; Predicted transcriptional regulator, contains C-terminal CBS domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001807
- InterPro:   IPR000644
- InterPro:   IPR016436
- InterPro:   IPR005104
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00571 CBS; PF03444 DUF293 [H]

EC number: NA

Molecular weight: Translated: 32136; Mature: 32136

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTPIQKDIIIALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALALVEGVPGP
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
KGGYKPTGAAYDALRIQQLKNESVVPLYRNNVVVNGATAAEISFTTVRNPDACNGVVRVI
CCCCCCCCCHHHHHHHHHHCCCCCCEEEECCEEEECCCEEEEEEEECCCCCHHHHHHHHH
GNIKDFVMDDKLQVGPTPVNRLIVRGEVTGRDDTNNSILFNITEMISLPKKHVKHYMKYP
HHHHHHHCCCCCCCCCCCHHEEEEEEEECCCCCCCCCEEEEHHHHHHCCHHHHHHHHHCC
PLLVNLNASIQEATRLFIRNNVHGAPVEDKGKIVGIITYTDIAHAIAQGKPNVKVKDIMT
CEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCHHHHHH
KELITVDGDMQLYDVVKLFHKYNVGRLIVTINGVPKGTLSKTDVLNELAVY
HHEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MELTPIQKDIIIALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALALVEGVPGP
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
KGGYKPTGAAYDALRIQQLKNESVVPLYRNNVVVNGATAAEISFTTVRNPDACNGVVRVI
CCCCCCCCCHHHHHHHHHHCCCCCCEEEECCEEEECCCEEEEEEEECCCCCHHHHHHHHH
GNIKDFVMDDKLQVGPTPVNRLIVRGEVTGRDDTNNSILFNITEMISLPKKHVKHYMKYP
HHHHHHHCCCCCCCCCCCHHEEEEEEEECCCCCCCCCEEEEHHHHHHCCHHHHHHHHHCC
PLLVNLNASIQEATRLFIRNNVHGAPVEDKGKIVGIITYTDIAHAIAQGKPNVKVKDIMT
CEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCCHHHHHH
KELITVDGDMQLYDVVKLFHKYNVGRLIVTINGVPKGTLSKTDVLNELAVY
HHEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]