| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is lepA [C]
Identifier: 21228466
GI number: 21228466
Start: 2821477
End: 2822148
Strand: Direct
Name: lepA [C]
Synonym: MM_2364
Alternate gene names: 21228466
Gene position: 2821477-2822148 (Clockwise)
Preceding gene: 21228465
Following gene: 21228467
Centisome position: 68.88
GC content: 44.2
Gene sequence:
>672_bases GTGTTATGCTTTTCCCAAGGGAGGGAAGCCATGAATATGATAAAACGATTTAAGGTAAGCTTTTCAAAAATGTTCAATAA ACTGTTCAAGAAAAAAGGAGCATGTATCGGTATATACGGCCCCCCGAATGCCGGCAAGACAACCCTCAGTAACCGTATCC TTAAAGACTGGGTAGGAAGTGATGAAACAATGGGATCGGTTTCACACATCGCCCACGAAACCAGGCACGCAAAAAGGAAA AACGGTGTTACTATCGAAACTAACGGGCATACTATCAGCCTTGATATTGTTGACACTCCCGGGCTTGCAACAAAGATCGA TTTCCATGACTTCATGGAACAGGGAATGAGCGATGTAGAATCAAAGAAAAGGTCCAAAGAAGCAACAGAGGGTGTAATTG AAGCTGTAAAATGGCTTGATGACCTTGACGGAGTCATACTGGTTATGGATTCCACAGAGAACCCCTATACTCAGGTTAAT GTAACTGTTATAGGAAATATGGAAGCTAGAAACCTTCCGCTTCTCATTGTAGCAAATAAGGTAGACCTTCCTAACGCCGA CCCAGGAGTTATAAAGGAAGCCTTCCCTCAGCACCCTATGGTACCTGTCTCAGCGCTTGAAGGAGTGGGTATGGACTCAT TCTATGAAGCTCTGAGCAAACAGTTCGGGTGA
Upstream 100 bases:
>100_bases CTTAACAAGTGGAAATTATTTATATGCCAGGATTGATTAGATAAAAATATCACGAAAACACCAGTAACCCATACAGGAAA GCAATCCGAGAAATCCTTTG
Downstream 100 bases:
>100_bases TCCAGATGCAGGGAATCCAACTTGACCTTATATCCGAAGCCAAAATTTCTCAGATGGCTTCCATGGAAAAAGTCCGGTAT ATAATCGATGAGGTGAGAAA
Product: GTP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 223; Mature: 223
Protein sequence:
>223_residues MLCFSQGREAMNMIKRFKVSFSKMFNKLFKKKGACIGIYGPPNAGKTTLSNRILKDWVGSDETMGSVSHIAHETRHAKRK NGVTIETNGHTISLDIVDTPGLATKIDFHDFMEQGMSDVESKKRSKEATEGVIEAVKWLDDLDGVILVMDSTENPYTQVN VTVIGNMEARNLPLLIVANKVDLPNADPGVIKEAFPQHPMVPVSALEGVGMDSFYEALSKQFG
Sequences:
>Translated_223_residues MLCFSQGREAMNMIKRFKVSFSKMFNKLFKKKGACIGIYGPPNAGKTTLSNRILKDWVGSDETMGSVSHIAHETRHAKRK NGVTIETNGHTISLDIVDTPGLATKIDFHDFMEQGMSDVESKKRSKEATEGVIEAVKWLDDLDGVILVMDSTENPYTQVN VTVIGNMEARNLPLLIVANKVDLPNADPGVIKEAFPQHPMVPVSALEGVGMDSFYEALSKQFG >Mature_223_residues MLCFSQGREAMNMIKRFKVSFSKMFNKLFKKKGACIGIYGPPNAGKTTLSNRILKDWVGSDETMGSVSHIAHETRHAKRK NGVTIETNGHTISLDIVDTPGLATKIDFHDFMEQGMSDVESKKRSKEATEGVIEAVKWLDDLDGVILVMDSTENPYTQVN VTVIGNMEARNLPLLIVANKVDLPNADPGVIKEAFPQHPMVPVSALEGVGMDSFYEALSKQFG
Specific function: Unknown
COG id: COG1100
COG function: function code R; GTPase SAR1 and related small G proteins
Gene ontology:
Cell location: Present In The Cytoplasm Membrane And Is Also Found In The Periplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24561; Mature: 24561
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLCFSQGREAMNMIKRFKVSFSKMFNKLFKKKGACIGIYGPPNAGKTTLSNRILKDWVGS CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCC DETMGSVSHIAHETRHAKRKNGVTIETNGHTISLDIVDTPGLATKIDFHDFMEQGMSDVE CCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEEEECCCCEEECCHHHHHHHHHHHHH SKKRSKEATEGVIEAVKWLDDLDGVILVMDSTENPYTQVNVTVIGNMEARNLPLLIVANK HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEEECC VDLPNADPGVIKEAFPQHPMVPVSALEGVGMDSFYEALSKQFG CCCCCCCCCHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure MLCFSQGREAMNMIKRFKVSFSKMFNKLFKKKGACIGIYGPPNAGKTTLSNRILKDWVGS CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCC DETMGSVSHIAHETRHAKRKNGVTIETNGHTISLDIVDTPGLATKIDFHDFMEQGMSDVE CCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEEEECCCCEEECCHHHHHHHHHHHHH SKKRSKEATEGVIEAVKWLDDLDGVILVMDSTENPYTQVNVTVIGNMEARNLPLLIVANK HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEEECC VDLPNADPGVIKEAFPQHPMVPVSALEGVGMDSFYEALSKQFG CCCCCCCCCHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA