| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228298
Identifier: 21228298
GI number: 21228298
Start: 2608535
End: 2609350
Strand: Reverse
Name: 21228298
Synonym: MM_2196
Alternate gene names: NA
Gene position: 2609350-2608535 (Counterclockwise)
Preceding gene: 21228299
Following gene: 21228297
Centisome position: 63.7
GC content: 44.98
Gene sequence:
>816_bases TTGAGAATGGACCGCCAGACATACCAGAAATTATATAGTTCGCTGCATAACTTTAGAGACGTTTTCCGCCTCTCAGAGGA AGATACCATGCCTCCTGGCATGCTTGCTACCATTCTTAATCAAAAAATAGTGAAAATGACGAGGTTCAAGCACAGAAAAG TCTATTCCAGAGAAAAGGAACTATTTTTGCGGTGGAAGCAGGGAAGGTCCATTCTTGAACTTGCAGAACACACATTTTTT CCTCCAACCCTCATGGCTTCCTTAATCCTTAAAAACTGTGACCTGTCCCGAAAAAATATAAACTGGCTGTTCAAGCACCT GGACTGCATTGAAAACCGCCGCCTGAGAAGAGAAGTCAGAAAAGCTCTTGAAGCAGACTATTTCTTCTCTCCGCGTGCCC ATGAGATGCAGTGCAAAAAGGGCGAAATGGGAGAAGAAATTATCCGCAAATGGCTTGATGACAGGGAAATTTCTTACTGC ACCGAAGCTGAAATAAGGGCTCAGGGAGACGGGAAGACCCCGGATTTTGTCCTTTCCGACCCTATTCCCATAGAGGACCA CATGGTCAGGTGGATTGAAAGCAAAGCCCTTTTTGGGGACGATTTCGAACACAAGCATTACGCAAAGAAACAGTTCAGGG AATACGCCGACATTTTCGGGGAAGGCATGGTAGTTTACTGGTATGGTTACCTCGAAGACCTCAGTTCCGAAGACGAAGGC TACCTGATAAAAGACCACAGCTTTTTTGGGGAATATAAAGAGCAGACGGATGAACTGTTTAACTACCTGGTTTACTGGGA ATCCCCGGTAAAATAA
Upstream 100 bases:
>100_bases AGTCTACAGGAAAAAAAACCCTGCATATTGGAAAGTTCGTTTTCCGTTCATGTTATTCAACTTTATTTTCTATGTTAAAA CCAGAAAAGGGACTCACTGA
Downstream 100 bases:
>100_bases GCCGGGTTACAGGCCAGAATGAAATAGACCGGTAAATGAACTGAATAAACCGGGAAATATCTGGCTTTAATTTCAACTTT AAAATTTCAACTTTAAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MRMDRQTYQKLYSSLHNFRDVFRLSEEDTMPPGMLATILNQKIVKMTRFKHRKVYSREKELFLRWKQGRSILELAEHTFF PPTLMASLILKNCDLSRKNINWLFKHLDCIENRRLRREVRKALEADYFFSPRAHEMQCKKGEMGEEIIRKWLDDREISYC TEAEIRAQGDGKTPDFVLSDPIPIEDHMVRWIESKALFGDDFEHKHYAKKQFREYADIFGEGMVVYWYGYLEDLSSEDEG YLIKDHSFFGEYKEQTDELFNYLVYWESPVK
Sequences:
>Translated_271_residues MRMDRQTYQKLYSSLHNFRDVFRLSEEDTMPPGMLATILNQKIVKMTRFKHRKVYSREKELFLRWKQGRSILELAEHTFF PPTLMASLILKNCDLSRKNINWLFKHLDCIENRRLRREVRKALEADYFFSPRAHEMQCKKGEMGEEIIRKWLDDREISYC TEAEIRAQGDGKTPDFVLSDPIPIEDHMVRWIESKALFGDDFEHKHYAKKQFREYADIFGEGMVVYWYGYLEDLSSEDEG YLIKDHSFFGEYKEQTDELFNYLVYWESPVK >Mature_271_residues MRMDRQTYQKLYSSLHNFRDVFRLSEEDTMPPGMLATILNQKIVKMTRFKHRKVYSREKELFLRWKQGRSILELAEHTFF PPTLMASLILKNCDLSRKNINWLFKHLDCIENRRLRREVRKALEADYFFSPRAHEMQCKKGEMGEEIIRKWLDDREISYC TEAEIRAQGDGKTPDFVLSDPIPIEDHMVRWIESKALFGDDFEHKHYAKKQFREYADIFGEGMVVYWYGYLEDLSSEDEG YLIKDHSFFGEYKEQTDELFNYLVYWESPVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI194018542, Length=234, Percent_Identity=32.0512820512821, Blast_Score=117, Evalue=8e-27, Organism=Homo sapiens, GI14210512, Length=180, Percent_Identity=34.4444444444444, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI21358261, Length=231, Percent_Identity=26.4069264069264, Blast_Score=79, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32681; Mature: 32681
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRMDRQTYQKLYSSLHNFRDVFRLSEEDTMPPGMLATILNQKIVKMTRFKHRKVYSREKE CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFLRWKQGRSILELAEHTFFPPTLMASLILKNCDLSRKNINWLFKHLDCIENRRLRREVR HHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH KALEADYFFSPRAHEMQCKKGEMGEEIIRKWLDDREISYCTEAEIRAQGDGKTPDFVLSD HHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCHHCCCHHEECCCCCCCCEEECC PIPIEDHMVRWIESKALFGDDFEHKHYAKKQFREYADIFGEGMVVYWYGYLEDLSSEDEG CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCCC YLIKDHSFFGEYKEQTDELFNYLVYWESPVK EEEECCHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MRMDRQTYQKLYSSLHNFRDVFRLSEEDTMPPGMLATILNQKIVKMTRFKHRKVYSREKE CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFLRWKQGRSILELAEHTFFPPTLMASLILKNCDLSRKNINWLFKHLDCIENRRLRREVR HHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH KALEADYFFSPRAHEMQCKKGEMGEEIIRKWLDDREISYCTEAEIRAQGDGKTPDFVLSD HHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCHHCCCHHEECCCCCCCCEEECC PIPIEDHMVRWIESKALFGDDFEHKHYAKKQFREYADIFGEGMVVYWYGYLEDLSSEDEG CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCCC YLIKDHSFFGEYKEQTDELFNYLVYWESPVK EEEECCHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA