| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228267
Identifier: 21228267
GI number: 21228267
Start: 2567938
End: 2568444
Strand: Direct
Name: 21228267
Synonym: MM_2165
Alternate gene names: NA
Gene position: 2567938-2568444 (Clockwise)
Preceding gene: 21228262
Following gene: 21228268
Centisome position: 62.69
GC content: 34.91
Gene sequence:
>507_bases ATGAGTTTGGAAATGTTTACTACTTCTGATGTTGCCACAGCTATCTGTAGTTCCTGTGACAAGAATGAGAAGTTAAAACT TCAAGCGTTGCTGTTAGTTAAAAATGGTTTGAGTCCAGCTAAAGTTGCAGAAGATTTCTCAGTTCATCGTTCAACAGTTC ATCGTTGGATGAAAAGAGCTGAAGAAGAAGGTTTGTCCAGCCTTAAATGTAGACCTGGTCGAGGAGTAAAGTCTTTTTTA ACTGAAGAGCAACTTTCTGTGTTAAAGAAAGCATTATCAGAGCCAATACCAACAGATGATGGCTTTTCTCGTGGTTGGCA AACTAAGGATGCAATTCAATTTGTCAGAGAGAAATTTGGAATATCTTATTCCAAATCAAGAATGAGACAAATTATTAAAA ATTTAGGATTTAGTAGAATTACATGTAGACCTCAATCAAAAAGACGAAATCAGGCATTAACAAACGAATTTATTGCTGAA ATCAAAAAAAAGACTCTTAAATCCTGA
Upstream 100 bases:
>100_bases AAGTACATATTCCCGAAATTTTATTTCAGCTGACAATATATAGTGACCCTTCTATATAATGCAACATTTATATAATTGAA GTAATTATATTATTTTAATT
Downstream 100 bases:
>100_bases CTATTTATTTGTCACTCAGGATGAGAGTAGTTTTTATTTAGACTCAAACAGATCAAAATGTTGGGCAATAAAAGGCTCTA AGCCTATTAAATTTATAAGT
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MSLEMFTTSDVATAICSSCDKNEKLKLQALLLVKNGLSPAKVAEDFSVHRSTVHRWMKRAEEEGLSSLKCRPGRGVKSFL TEEQLSVLKKALSEPIPTDDGFSRGWQTKDAIQFVREKFGISYSKSRMRQIIKNLGFSRITCRPQSKRRNQALTNEFIAE IKKKTLKS
Sequences:
>Translated_168_residues MSLEMFTTSDVATAICSSCDKNEKLKLQALLLVKNGLSPAKVAEDFSVHRSTVHRWMKRAEEEGLSSLKCRPGRGVKSFL TEEQLSVLKKALSEPIPTDDGFSRGWQTKDAIQFVREKFGISYSKSRMRQIIKNLGFSRITCRPQSKRRNQALTNEFIAE IKKKTLKS >Mature_167_residues SLEMFTTSDVATAICSSCDKNEKLKLQALLLVKNGLSPAKVAEDFSVHRSTVHRWMKRAEEEGLSSLKCRPGRGVKSFLT EEQLSVLKKALSEPIPTDDGFSRGWQTKDAIQFVREKFGISYSKSRMRQIIKNLGFSRITCRPQSKRRNQALTNEFIAEI KKKTLKS
Specific function: Unknown
COG id: COG3415
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19056; Mature: 18925
Theoretical pI: Translated: 10.67; Mature: 10.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLEMFTTSDVATAICSSCDKNEKLKLQALLLVKNGLSPAKVAEDFSVHRSTVHRWMKRA CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH EEEGLSSLKCRPGRGVKSFLTEEQLSVLKKALSEPIPTDDGFSRGWQTKDAIQFVREKFG HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHC ISYSKSRMRQIIKNLGFSRITCRPQSKRRNQALTNEFIAEIKKKTLKS CCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLEMFTTSDVATAICSSCDKNEKLKLQALLLVKNGLSPAKVAEDFSVHRSTVHRWMKRA CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH EEEGLSSLKCRPGRGVKSFLTEEQLSVLKKALSEPIPTDDGFSRGWQTKDAIQFVREKFG HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHC ISYSKSRMRQIIKNLGFSRITCRPQSKRRNQALTNEFIAEIKKKTLKS CCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA