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The map label for this gene is rpl4lp [H]

Identifier: 21228227

GI number: 21228227

Start: 2539521

End: 2540282

Strand: Direct

Name: rpl4lp [H]

Synonym: MM_2125

Alternate gene names: 21228227

Gene position: 2539521-2540282 (Clockwise)

Preceding gene: 21228226

Following gene: 21228228

Centisome position: 61.99

GC content: 52.36

Gene sequence:

>762_bases
ATGGCTACAGCAAAAACCATAGACCTTACAGGAAGAACTGTAGGGGAAATCGAACTCCCTGCAGTGTTTGACGCAGATTA
TCGCCCTGACCTTATTAAAAAGGCAGTGCTTGCAGCCCAGGCAAACAGGCTTCAGCCCTACGGTCCCAGCCTCTACGCAG
GTATGAAGACTTCGGCAACAGGCTGGGGTTCCGGAAGAGGCGTATCCCACGTTCCCAGGCTCAAAAACAGCAGCAGAGCT
GCAAGAGTCCCGCACGCAAAGGGTGGAAGAAGGGCTCACCCGCCAAAACCGGAAGCTGACAGGAGCGAGAAGGTCAACAC
AAAAGAGCGCCGTTACGCAATCCGCTCGGCAATCGCAGCAACCATAGACCCTACCCTCGTAAACCTGAGAGGGCACATCT
TTGAAGCCGAACTTCCGATTGTAGCAGTAAATGACCTTGAAAACCTTGAGAGGACAAAGCAGGTAATAGAGTTCCTTGAA
GCTGCTGGTCTCTACGAGGACGTGCTCAGGGCAAAATATGGAAGGCACATAAGAGCCGGCAGAGGAAAGCTCAGAGGCAG
GAAATACAAGCACAAGAAGAGTGTTCTGATTGTTGCAGGAGAAAACTCTCCTATCCTGAAGGCTGCAAGAAACCTGTCGG
GAGTAGACGTCGTAACAGTAGACTCACTGAATGCCGAACTGCTCGCACCGGGTACGCACGCAGGTCGCCTTACTGTCTGG
ACAGAGTCTGCAATTGGAAAACTGGAGGGCGCATTCCAATGA

Upstream 100 bases:

>100_bases
GCTTATAAGGCTCAGAGATCCGATCAGAGCAAAGAAAGCCGACCTTGGCGAACCCAACATCCTGTACATAAGCAGGGAAT
CCAAGCAGGGGTGATCTAAG

Downstream 100 bases:

>100_bases
GTTCTATCAATTATCCATTTGTTACTGAAAAAGCGATGATGCTGCTTGACGAAAACAAGCTCCAGTTCATCGTTGACACC
AGGTCAAACAAAAAGCAGAT

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MATAKTIDLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLKNSSRA
ARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEAELPIVAVNDLENLERTKQVIEFLE
AAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIVAGENSPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVW
TESAIGKLEGAFQ

Sequences:

>Translated_253_residues
MATAKTIDLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLKNSSRA
ARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEAELPIVAVNDLENLERTKQVIEFLE
AAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIVAGENSPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVW
TESAIGKLEGAFQ
>Mature_252_residues
ATAKTIDLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLKNSSRAA
RVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEAELPIVAVNDLENLERTKQVIEFLEA
AGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIVAGENSPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVWT
ESAIGKLEGAFQ

Specific function: Forms part of the polypeptide exit tunnel [H]

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family [H]

Homologues:

Organism=Homo sapiens, GI16579885, Length=243, Percent_Identity=37.4485596707819, Blast_Score=144, Evalue=9e-35,
Organism=Caenorhabditis elegans, GI17508669, Length=247, Percent_Identity=37.6518218623482, Blast_Score=167, Evalue=4e-42,
Organism=Saccharomyces cerevisiae, GI6319505, Length=253, Percent_Identity=39.9209486166008, Blast_Score=160, Evalue=3e-40,
Organism=Saccharomyces cerevisiae, GI6320215, Length=253, Percent_Identity=39.9209486166008, Blast_Score=159, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24650747, Length=244, Percent_Identity=37.2950819672131, Blast_Score=161, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970 [H]

Pfam domain/function: PF00573 Ribosomal_L4 [H]

EC number: NA

Molecular weight: Translated: 27481; Mature: 27350

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAKTIDLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSAT
CCCCEEEEECCCEECCEECCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCC
GWGSGRGVSHVPRLKNSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
TIDPTLVNLRGHIFEAELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAG
HCCCEEEECCCEEEECCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
RGKLRGRKYKHKKSVLIVAGENSPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVW
CCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCEEEEECCCCCEEECCCCCCCEEEEE
TESAIGKLEGAFQ
ECHHHHHHCCCCC
>Mature Secondary Structure 
ATAKTIDLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSAT
CCCEEEEECCCEECCEECCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCC
GWGSGRGVSHVPRLKNSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
TIDPTLVNLRGHIFEAELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAG
HCCCEEEECCCEEEECCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
RGKLRGRKYKHKKSVLIVAGENSPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVW
CCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCCEEEEECCCCCEEECCCCCCCEEEEE
TESAIGKLEGAFQ
ECHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]