| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228207
Identifier: 21228207
GI number: 21228207
Start: 2516177
End: 2517307
Strand: Reverse
Name: 21228207
Synonym: MM_2105
Alternate gene names: NA
Gene position: 2517307-2516177 (Counterclockwise)
Preceding gene: 21228208
Following gene: 21228206
Centisome position: 61.45
GC content: 28.29
Gene sequence:
>1131_bases ATGCCCCAAAATAATTTTAGAAAATGTATACTTTCCATTTGCGATATATCTCCAACTAAATTTGGTTCTTTTGAAGAATT TATCGTATCACTTACTGAAAAATTAAGAAAAGATGACTTTGAACACATTATAGTTTTCAGAGCTAAACCGATAAAGAGCG TAGAAGATTCCCTATTAAATTTAGGTGCGAAAATAGAGATTATTAAACCATCAAAAAGCAATATATATAATTTTATTATA TTTTATAAATATATAAAGAAGAACAAACCTGATATAGTCCATTTTCACTTTTATCCTATTTACACGGTTGTGAATTACTT AAAATTATTTTTCAATATAAGGATAGTATATACAGACCATATGGGGGGAAAAAAAGCAAAAAAATTCTCAAAGAAATTAT TACGTAAGATTTACTATTTTACTAACTCGAAGTTATTTAGTAGTGGAATCGATAAAATCATTTGTGTATCAAATTTTGTA AAATCTAAGTATTCGAGAGAGTATGGAATAGATTCGGAGAAGTTATATACCATTTATAATGGCATTAACATGGAGAAGTT CCAAAAAAATACAAACACCGAAGATATAAAAAGAAAATTTAATCTAAAAGATGAGTTTGTGATCACATGTGTAGGACTAA GGAGAGACAAAGGTCCTCATTATCTAATTAAAGCGGCTCCTTCGATATTAAAAGAAATACCTAATACAAAATTTATATTA GTTGGAGAAGGGGAATGCAAAGACCGCATAGAGTCATTAATAGAAAAATTAGACATAAAAGATAAAGTGATGTTAGTAGG GAACGTACCGAATTTAGCAGAAGTATATAGTATATCATCGTGTGTAGTAATCCCTTCTTTGTTTGAAGAAGCTTTTTGTT TTGTTGCAGCTGAAGCAATGTCAATAGAAGCTCCTATTGTAGCATTTGATTCAGGAGCCATTAAAGAAATAATTTACAAA AAAGAAAGCGTAGTATCTAGAAGTTCCAAATTATTATCTCAAAAGATAATAGAATGTTTTAAAAATGGAGATATTTCTAC AAAAGGTTCGAGAGAATATGTATGTAGAAACTTCTCAATTAACAAGAATATCTGTACTCACGTTGAACTATATAATAAAT TGTTAAAGTAA
Upstream 100 bases:
>100_bases TTTGAGATAAAAAATAACTATAAATCTTTTTCTGAAACTCTAAGTTCATCCCTGGAATATGCAGTAAAATAAACCGAAAG TGTTGGAAGAGGTAAGATTG
Downstream 100 bases:
>100_bases CACGATAGAGAATTATATAACAGGTCATCGCTCAAACAACTTCACAATATTCGAACCGAATGAAATGATAGTAACAATGT AAGTAACAAGCCAAATATCT
Product: putative glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MPQNNFRKCILSICDISPTKFGSFEEFIVSLTEKLRKDDFEHIIVFRAKPIKSVEDSLLNLGAKIEIIKPSKSNIYNFII FYKYIKKNKPDIVHFHFYPIYTVVNYLKLFFNIRIVYTDHMGGKKAKKFSKKLLRKIYYFTNSKLFSSGIDKIICVSNFV KSKYSREYGIDSEKLYTIYNGINMEKFQKNTNTEDIKRKFNLKDEFVITCVGLRRDKGPHYLIKAAPSILKEIPNTKFIL VGEGECKDRIESLIEKLDIKDKVMLVGNVPNLAEVYSISSCVVIPSLFEEAFCFVAAEAMSIEAPIVAFDSGAIKEIIYK KESVVSRSSKLLSQKIIECFKNGDISTKGSREYVCRNFSINKNICTHVELYNKLLK
Sequences:
>Translated_376_residues MPQNNFRKCILSICDISPTKFGSFEEFIVSLTEKLRKDDFEHIIVFRAKPIKSVEDSLLNLGAKIEIIKPSKSNIYNFII FYKYIKKNKPDIVHFHFYPIYTVVNYLKLFFNIRIVYTDHMGGKKAKKFSKKLLRKIYYFTNSKLFSSGIDKIICVSNFV KSKYSREYGIDSEKLYTIYNGINMEKFQKNTNTEDIKRKFNLKDEFVITCVGLRRDKGPHYLIKAAPSILKEIPNTKFIL VGEGECKDRIESLIEKLDIKDKVMLVGNVPNLAEVYSISSCVVIPSLFEEAFCFVAAEAMSIEAPIVAFDSGAIKEIIYK KESVVSRSSKLLSQKIIECFKNGDISTKGSREYVCRNFSINKNICTHVELYNKLLK >Mature_375_residues PQNNFRKCILSICDISPTKFGSFEEFIVSLTEKLRKDDFEHIIVFRAKPIKSVEDSLLNLGAKIEIIKPSKSNIYNFIIF YKYIKKNKPDIVHFHFYPIYTVVNYLKLFFNIRIVYTDHMGGKKAKKFSKKLLRKIYYFTNSKLFSSGIDKIICVSNFVK SKYSREYGIDSEKLYTIYNGINMEKFQKNTNTEDIKRKFNLKDEFVITCVGLRRDKGPHYLIKAAPSILKEIPNTKFILV GEGECKDRIESLIEKLDIKDKVMLVGNVPNLAEVYSISSCVVIPSLFEEAFCFVAAEAMSIEAPIVAFDSGAIKEIIYKK ESVVSRSSKLLSQKIIECFKNGDISTKGSREYVCRNFSINKNICTHVELYNKLLK
Specific function: Unknown
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 1 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI9755344, Length=224, Percent_Identity=26.3392857142857, Blast_Score=66, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 - InterPro: IPR013534 [H]
Pfam domain/function: PF08323 Glyco_transf_5; PF00534 Glycos_transf_1 [H]
EC number: NA
Molecular weight: Translated: 43395; Mature: 43264
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQNNFRKCILSICDISPTKFGSFEEFIVSLTEKLRKDDFEHIIVFRAKPIKSVEDSLLN CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC LGAKIEIIKPSKSNIYNFIIFYKYIKKNKPDIVHFHFYPIYTVVNYLKLFFNIRIVYTDH CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHEEEEEEEEC MGGKKAKKFSKKLLRKIYYFTNSKLFSSGIDKIICVSNFVKSKYSREYGIDSEKLYTIYN CCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEEC GINMEKFQKNTNTEDIKRKFNLKDEFVITCVGLRRDKGPHYLIKAAPSILKEIPNTKFIL CCCHHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHCCCCEEEE VGEGECKDRIESLIEKLDIKDKVMLVGNVPNLAEVYSISSCVVIPSLFEEAFCFVAAEAM EECCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH SIEAPIVAFDSGAIKEIIYKKESVVSRSSKLLSQKIIECFKNGDISTKGSREYVCRNFSI CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCC NKNICTHVELYNKLLK CCCHHHHHHHHHHHCC >Mature Secondary Structure PQNNFRKCILSICDISPTKFGSFEEFIVSLTEKLRKDDFEHIIVFRAKPIKSVEDSLLN CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHC LGAKIEIIKPSKSNIYNFIIFYKYIKKNKPDIVHFHFYPIYTVVNYLKLFFNIRIVYTDH CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHEEEEEEEEC MGGKKAKKFSKKLLRKIYYFTNSKLFSSGIDKIICVSNFVKSKYSREYGIDSEKLYTIYN CCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEEC GINMEKFQKNTNTEDIKRKFNLKDEFVITCVGLRRDKGPHYLIKAAPSILKEIPNTKFIL CCCHHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHCCCCEEEE VGEGECKDRIESLIEKLDIKDKVMLVGNVPNLAEVYSISSCVVIPSLFEEAFCFVAAEAM EECCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH SIEAPIVAFDSGAIKEIIYKKESVVSRSSKLLSQKIIECFKNGDISTKGSREYVCRNFSI CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECCCC NKNICTHVELYNKLLK CCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]