| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228206
Identifier: 21228206
GI number: 21228206
Start: 2514931
End: 2516019
Strand: Reverse
Name: 21228206
Synonym: MM_2104
Alternate gene names: NA
Gene position: 2516019-2514931 (Counterclockwise)
Preceding gene: 21228207
Following gene: 21228205
Centisome position: 61.42
GC content: 24.43
Gene sequence:
>1089_bases ATGAATTTTTTTGTAGATAATATATATATTTACATCTTCCCATATTTAATAATACCTTTTTTTATATTTTATAGGCTGAA AATATATCATACAAAATTATATAATTTTGAATTTTTGTCTAAAGGGAATACAGATCGAATAAGAGGCTTATTAGCACTTG TAGTGATTTTACATCACGTTGCTCAAAGAATGGATAACGTAGGTTTAATGTTACCTTTTTGTCAGGCAGGAAGCTATGCT GTCAGTATATTCTTATTTTTTTCAGGCTATGGATTAATGACCTCAAGTTTAAAAAATCCAAATTATTTCAAAAATTTTTT TTGTAAAAGAATCTCAAAGGTATACATCCCTTTTTTAATAATAAACATCTTTACCTTATCAATATATCAATTGACATTTA ATTCTGAATATAGTCTCATAGACAAGTTATTTTACACTACAGGTATCAAACTTATCGATTCTGTAACTTGGTATATAATA ATTACATTAGTATTTTATGTAATATTTTATATTCTGTTTAAAAATAATCAAATTAACGTAGCGGTCAGGAGATTATTTAT TTATTCATTAATTTTTTATTTTAGCTGTTACATTATAAAAATCGGAAGTTGGTGGTATATAAATTCATTTAGTTTTCCAA TTGGAATATATACAGCGATCAACTTTAACAAGATATGCAGCTATATAGAAAAGAACTATACTAAATATACGATCTTTTTC ATATTAAGTTTTGGTATCTTAAGCTCTGGGATTGCGTCTTTTTTATTGTATCAAGTTTTTCATTTTCACTTTAAAGTAAT AATTGAAACATTATCTTCCATTCTTTTCCTACCAGTAGTCCTATTACTTTTATTAAAGGTAGATCTACGGCACAATTTTT TAAACTTCTTTGGAGATATTTCTTATGAGATGTATCTCATACACATGAAAATTTATATCATATTAGGAGAGTTCCTCCAA ATAAATAAAAGTTATAACATACTTGTTTATTTTATAATAGTTATAATGTTGTCAAAAGGAATATTATTATTTGAAAAACT TTTACTAAAAACAATACATAAAAATACTTACGTCATTAAATATACCTAA
Upstream 100 bases:
>100_bases GAATGAAATGATAGTAACAATGTAAGTAACAAGCCAAATATCTAGATACGATATGGGCCACTGAGGAAAATACTTGCGTT TTACAGAGGTGGCGAAAAAT
Downstream 100 bases:
>100_bases TCTTACAGCAACAATTATCTGCTTTATAGTGTCAGGTAGCGTTTGTAAGCTATTTATCGAGATGGCAAAAACTCAGAATC ATGTACTAAACCTCGAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 362; Mature: 362
Protein sequence:
>362_residues MNFFVDNIYIYIFPYLIIPFFIFYRLKIYHTKLYNFEFLSKGNTDRIRGLLALVVILHHVAQRMDNVGLMLPFCQAGSYA VSIFLFFSGYGLMTSSLKNPNYFKNFFCKRISKVYIPFLIINIFTLSIYQLTFNSEYSLIDKLFYTTGIKLIDSVTWYII ITLVFYVIFYILFKNNQINVAVRRLFIYSLIFYFSCYIIKIGSWWYINSFSFPIGIYTAINFNKICSYIEKNYTKYTIFF ILSFGILSSGIASFLLYQVFHFHFKVIIETLSSILFLPVVLLLLLKVDLRHNFLNFFGDISYEMYLIHMKIYIILGEFLQ INKSYNILVYFIIVIMLSKGILLFEKLLLKTIHKNTYVIKYT
Sequences:
>Translated_362_residues MNFFVDNIYIYIFPYLIIPFFIFYRLKIYHTKLYNFEFLSKGNTDRIRGLLALVVILHHVAQRMDNVGLMLPFCQAGSYA VSIFLFFSGYGLMTSSLKNPNYFKNFFCKRISKVYIPFLIINIFTLSIYQLTFNSEYSLIDKLFYTTGIKLIDSVTWYII ITLVFYVIFYILFKNNQINVAVRRLFIYSLIFYFSCYIIKIGSWWYINSFSFPIGIYTAINFNKICSYIEKNYTKYTIFF ILSFGILSSGIASFLLYQVFHFHFKVIIETLSSILFLPVVLLLLLKVDLRHNFLNFFGDISYEMYLIHMKIYIILGEFLQ INKSYNILVYFIIVIMLSKGILLFEKLLLKTIHKNTYVIKYT >Mature_362_residues MNFFVDNIYIYIFPYLIIPFFIFYRLKIYHTKLYNFEFLSKGNTDRIRGLLALVVILHHVAQRMDNVGLMLPFCQAGSYA VSIFLFFSGYGLMTSSLKNPNYFKNFFCKRISKVYIPFLIINIFTLSIYQLTFNSEYSLIDKLFYTTGIKLIDSVTWYII ITLVFYVIFYILFKNNQINVAVRRLFIYSLIFYFSCYIIKIGSWWYINSFSFPIGIYTAINFNKICSYIEKNYTKYTIFF ILSFGILSSGIASFLLYQVFHFHFKVIIETLSSILFLPVVLLLLLKVDLRHNFLNFFGDISYEMYLIHMKIYIILGEFLQ INKSYNILVYFIIVIMLSKGILLFEKLLLKTIHKNTYVIKYT
Specific function: Unknown
COG id: COG3936
COG function: function code G; Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43090; Mature: 43090
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFFVDNIYIYIFPYLIIPFFIFYRLKIYHTKLYNFEFLSKGNTDRIRGLLALVVILHHV CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEECCCCHHHHHHHHHHHHHHHHH AQRMDNVGLMLPFCQAGSYAVSIFLFFSGYGLMTSSLKNPNYFKNFFCKRISKVYIPFLI HHHHCCCCEEEEHHCCCCHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH INIFTLSIYQLTFNSEYSLIDKLFYTTGIKLIDSVTWYIIITLVFYVIFYILFKNNQINV HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AVRRLFIYSLIFYFSCYIIKIGSWWYINSFSFPIGIYTAINFNKICSYIEKNYTKYTIFF HHHHHHHHHHHHHHHHHHHEECCEEEEECCCCCCCEEEECCHHHHHHHHHHCCCHHHHHH ILSFGILSSGIASFLLYQVFHFHFKVIIETLSSILFLPVVLLLLLKVDLRHNFLNFFGDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SYEMYLIHMKIYIILGEFLQINKSYNILVYFIIVIMLSKGILLFEKLLLKTIHKNTYVIK CCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEE YT EC >Mature Secondary Structure MNFFVDNIYIYIFPYLIIPFFIFYRLKIYHTKLYNFEFLSKGNTDRIRGLLALVVILHHV CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECEEEECCCCHHHHHHHHHHHHHHHHH AQRMDNVGLMLPFCQAGSYAVSIFLFFSGYGLMTSSLKNPNYFKNFFCKRISKVYIPFLI HHHHCCCCEEEEHHCCCCHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH INIFTLSIYQLTFNSEYSLIDKLFYTTGIKLIDSVTWYIIITLVFYVIFYILFKNNQINV HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AVRRLFIYSLIFYFSCYIIKIGSWWYINSFSFPIGIYTAINFNKICSYIEKNYTKYTIFF HHHHHHHHHHHHHHHHHHHEECCEEEEECCCCCCCEEEECCHHHHHHHHHHCCCHHHHHH ILSFGILSSGIASFLLYQVFHFHFKVIIETLSSILFLPVVLLLLLKVDLRHNFLNFFGDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SYEMYLIHMKIYIILGEFLQINKSYNILVYFIIVIMLSKGILLFEKLLLKTIHKNTYVIK CCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEE YT EC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA