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The map label for this gene is nfeD

Identifier: 21228134

GI number: 21228134

Start: 2428197

End: 2429501

Strand: Reverse

Name: nfeD

Synonym: MM_2032

Alternate gene names: NA

Gene position: 2429501-2428197 (Counterclockwise)

Preceding gene: 21228135

Following gene: 21228130

Centisome position: 59.31

GC content: 43.98

Gene sequence:

>1305_bases
ATGAAAATGAAAAAGGCCTTCCATCCTCTCTTTATTTTATTTTTTTGCATCACTCTCACAGCTTCTTTTATGCTTTCTGC
AGAGGGAGCAACTGAAAACAGAGTGCTTGTGCTTGAAATAGCCGAATCTATTACTCCAGCATCCGATAATTTAATAGCTG
ACGCAATAGAAATAGCTGAAAACGGGAACTATGAGGCTTTCGTGATTACTCTGGATACTCCGGGCGGAGGGCTGGAAGAG
ACCCAGATAATCATAAAAGCAATTGAGAATACGACAGTTCCTGTTATCGGGTTTGTGCCGGAGAGCGGAAAAGCCTGGTC
TGCAGGAACCCTCATCCTTATGGGGACCGATATTGCTGCAATGGCTCCCTATACAGTAATAGGATCAGCACAGCCAGTGA
AGATGTCTGCAGAGGGGACAGTGCCTGTAGAAGACGATAAAATCATAAATGCCCTCGTTAAATTCTCTGTTGAAACCGCG
AGAAAACACGGGAGAAATGAAACTTTTGCAGAAGAAGTGATTACCAAAAACCGGAACCTGAACGATGAAGAAGCCCTGGA
ATATGGGGTAATCGAGTACAGAGCTTCTTCTATTCCTGACCTCATGGCTCAGGTAGATGGAGAAAATGTAAAAGGCAGGA
ATCTGCAAACCGCAAATGCAGAGATTGAAACCTACGAACCTCCCTTTCATCTACTCTTTCTGAAGATTATTTCAAACCCT
ATCCTTTCTTCCCTTCTGCTGACAATAGGGCTTTACGGGATTATCTTCGGGATCTCAAACCCGGGTGCCGGAGCAGAAAT
TTTGGGGATTATTGCTATCGTTCTCGGGCTGATAGGTACAGGGTTTGATATCAATATAGCAGCGTTTTTCCTTATCCTTG
TAGGGGCAGGGCTCCTTATTTTAGAACTTAATTCTCCGGGATTTGGAATTTTCGGGCTTGCAGGGCTCATCAGCCTGGTA
ATAGGCAGCCTCTTCCTCGTGCCTCTGGGGGAAAAGAATATCTATACACCTGAGTTCACAAGATTGCTGGTTCTGGCAAT
TGTTACTCCAACAGTCGTTATTGGGCTGTTTCTGGTATATGCGGTATACAAAGTGGCGGAGATCAGGAAAAAGAAACCTG
TTATTGGAACTATAATAGGAGATACTGCCCGGACAATAGACGCAGTAAGCCCTGAGAAAGCCGGATTTGTCCGGTATAAG
GGAGAGTACTGGAAAGCCAGGTCAGAAGAAGAGATAGAAGTTGATCAGGAAGTGGAAATTATTGGAAAAGAAAGGGAAGT
GCTGGTAATAAAAAGAAAAGTATAA

Upstream 100 bases:

>100_bases
CGCCCTTTCTAAGGCTATATCCGAAAAGAAAGAACTGTAAAAATGTATTAAAATTGAAAAAAATTATAAAGGATTGTAAA
GGCTAGAAAGGACCAGAATT

Downstream 100 bases:

>100_bases
ACCTCCCTTTCTCTTCTGCTTTTCTTTATACAGAGTTGTGTTTCCTTATTTCAGCTTAATCTTTTCTCTTGTTCTTTATT
TTCTCAAGAACCCTGTATTT

Product: nodulation protein

Products: NA

Alternate protein names: Membrane-Bound Serine Protease; Nodulation Protein NfeD; Nodulation Efficiency Protein D; Nodulation Competitiveness Protein NfeD; Serine Protease; NfeD Protein; Membrane Bound Peptidase; Transmembrane Protein; NfeD Family Protein; Nodulation Protein NfeD Related Protein; NfeD-Like Family; Protease/Transporter; Membrane-Bound Serine Protease-Like Protein; Membrane-Bound ClpP-Class Protease; Nodulation Efficiency Family Protein; Membrane-Bound Serine Protease ClpP Class; S49 Family Serine Protease; Short-Chain Alcohol Dehydrogenase; Membrane-Bound Serine Protease NfeD-Like Protein; NfeD Nodulation Like Protein Membrane Protein; Nodulation Efficiency Protein Nfed; NfeD-Like Membrane-Bound Serine Protease; Nfed Family Protein; Nodulation Protein; Membrane-Bound Protease; Nodulation Protein Nfed; Membrane-Bound Serine Protease Protein

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MKMKKAFHPLFILFFCITLTASFMLSAEGATENRVLVLEIAESITPASDNLIADAIEIAENGNYEAFVITLDTPGGGLEE
TQIIIKAIENTTVPVIGFVPESGKAWSAGTLILMGTDIAAMAPYTVIGSAQPVKMSAEGTVPVEDDKIINALVKFSVETA
RKHGRNETFAEEVITKNRNLNDEEALEYGVIEYRASSIPDLMAQVDGENVKGRNLQTANAEIETYEPPFHLLFLKIISNP
ILSSLLLTIGLYGIIFGISNPGAGAEILGIIAIVLGLIGTGFDINIAAFFLILVGAGLLILELNSPGFGIFGLAGLISLV
IGSLFLVPLGEKNIYTPEFTRLLVLAIVTPTVVIGLFLVYAVYKVAEIRKKKPVIGTIIGDTARTIDAVSPEKAGFVRYK
GEYWKARSEEEIEVDQEVEIIGKEREVLVIKRKV

Sequences:

>Translated_434_residues
MKMKKAFHPLFILFFCITLTASFMLSAEGATENRVLVLEIAESITPASDNLIADAIEIAENGNYEAFVITLDTPGGGLEE
TQIIIKAIENTTVPVIGFVPESGKAWSAGTLILMGTDIAAMAPYTVIGSAQPVKMSAEGTVPVEDDKIINALVKFSVETA
RKHGRNETFAEEVITKNRNLNDEEALEYGVIEYRASSIPDLMAQVDGENVKGRNLQTANAEIETYEPPFHLLFLKIISNP
ILSSLLLTIGLYGIIFGISNPGAGAEILGIIAIVLGLIGTGFDINIAAFFLILVGAGLLILELNSPGFGIFGLAGLISLV
IGSLFLVPLGEKNIYTPEFTRLLVLAIVTPTVVIGLFLVYAVYKVAEIRKKKPVIGTIIGDTARTIDAVSPEKAGFVRYK
GEYWKARSEEEIEVDQEVEIIGKEREVLVIKRKV
>Mature_434_residues
MKMKKAFHPLFILFFCITLTASFMLSAEGATENRVLVLEIAESITPASDNLIADAIEIAENGNYEAFVITLDTPGGGLEE
TQIIIKAIENTTVPVIGFVPESGKAWSAGTLILMGTDIAAMAPYTVIGSAQPVKMSAEGTVPVEDDKIINALVKFSVETA
RKHGRNETFAEEVITKNRNLNDEEALEYGVIEYRASSIPDLMAQVDGENVKGRNLQTANAEIETYEPPFHLLFLKIISNP
ILSSLLLTIGLYGIIFGISNPGAGAEILGIIAIVLGLIGTGFDINIAAFFLILVGAGLLILELNSPGFGIFGLAGLISLV
IGSLFLVPLGEKNIYTPEFTRLLVLAIVTPTVVIGLFLVYAVYKVAEIRKKKPVIGTIIGDTARTIDAVSPEKAGFVRYK
GEYWKARSEEEIEVDQEVEIIGKEREVLVIKRKV

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46930; Mature: 46930

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKKAFHPLFILFFCITLTASFMLSAEGATENRVLVLEIAESITPASDNLIADAIEIAE
CCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHC
NGNYEAFVITLDTPGGGLEETQIIIKAIENTTVPVIGFVPESGKAWSAGTLILMGTDIAA
CCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCHHH
MAPYTVIGSAQPVKMSAEGTVPVEDDKIINALVKFSVETARKHGRNETFAEEVITKNRNL
HCCEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
NDEEALEYGVIEYRASSIPDLMAQVDGENVKGRNLQTANAEIETYEPPFHLLFLKIISNP
CHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEECCCEEEECCCCHHHHHHHHHCCH
ILSSLLLTIGLYGIIFGISNPGAGAEILGIIAIVLGLIGTGFDINIAAFFLILVGAGLLI
HHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
LELNSPGFGIFGLAGLISLVIGSLFLVPLGEKNIYTPEFTRLLVLAIVTPTVVIGLFLVY
EEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVYKVAEIRKKKPVIGTIIGDTARTIDAVSPEKAGFVRYKGEYWKARSEEEIEVDQEVEI
HHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCEEEECCHHHCCCCCCCCCCCCHHHE
IGKEREVLVIKRKV
ECCCCEEEEEEECC
>Mature Secondary Structure
MKMKKAFHPLFILFFCITLTASFMLSAEGATENRVLVLEIAESITPASDNLIADAIEIAE
CCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHC
NGNYEAFVITLDTPGGGLEETQIIIKAIENTTVPVIGFVPESGKAWSAGTLILMGTDIAA
CCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCHHH
MAPYTVIGSAQPVKMSAEGTVPVEDDKIINALVKFSVETARKHGRNETFAEEVITKNRNL
HCCEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
NDEEALEYGVIEYRASSIPDLMAQVDGENVKGRNLQTANAEIETYEPPFHLLFLKIISNP
CHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEECCCEEEECCCCHHHHHHHHHCCH
ILSSLLLTIGLYGIIFGISNPGAGAEILGIIAIVLGLIGTGFDINIAAFFLILVGAGLLI
HHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
LELNSPGFGIFGLAGLISLVIGSLFLVPLGEKNIYTPEFTRLLVLAIVTPTVVIGLFLVY
EEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVYKVAEIRKKKPVIGTIIGDTARTIDAVSPEKAGFVRYKGEYWKARSEEEIEVDQEVEI
HHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCEEEECCHHHCCCCCCCCCCCCHHHE
IGKEREVLVIKRKV
ECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA