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The map label for this gene is ybbK [C]

Identifier: 21228135

GI number: 21228135

Start: 2429562

End: 2430344

Strand: Reverse

Name: ybbK [C]

Synonym: MM_2033

Alternate gene names: 21228135

Gene position: 2430344-2429562 (Counterclockwise)

Preceding gene: 21228137

Following gene: 21228134

Centisome position: 59.33

GC content: 44.06

Gene sequence:

>783_bases
ATGGTTGATTTCATTGGTGAATTAACGCTTCCTGTATTAATAGTTGTAATATTAATACTCTCACAATCCATAAAAATGGT
TAATGAGTACGAACGCGTTGTCATATTCAGGCTTGGCCGCCTTAGTGGGGTAAAAGGACCGGGTATATTTTTAATCATTC
CTATTATTGATAAAGCCATAAAAATTGACCTTAGAGTCATTGCGATTGATGTTCCCAAACAGGCAGTCATCACAAGGGAT
AATGTTACAGTTGAAGTGGATGCGGTTGTCTATTATAAAGTAGTCGAGCCAGGGGCTGCAATTACCCAGGTCGAAAACTA
CATGTTTGCAACTTCAACTCTTTCCCAGACCACTCTCAGGGACGTGCTGGGCCAGATGGAGCTCGATGAGCTGCTATCGG
AAAGGGAAAATATCAACAAACAGATTCAGGAACTGCTGGATGCTTACACTGACCCCTGGGGGATCAAGGTTACAGGTGTG
ACTATCCGGGACGTATCCCTGCCTGAAACAATGAAAAGGGCAATTGCAAAACAGGCTGAAGCCGAAAGGGAAAAACGTGC
AAGGATCATCCTTGCAGAAGGAGAGTTCCAGGCTGCAGAAAGAATGAAAGATGCTGCAACCCTTTACCAGGGAGTTCCAA
CTGCTATCAAGTTAAGAGAACTTCAGACGCTTGCTGAGATTGCCAGGGAGAAAAACCTCATTGTGGTTACAGAATCCAAG
TCCCCTGACACCGGAAACATAGCCGCCCTTTCTAAGGCTATATCCGAAAAGAAAGAACTGTAA

Upstream 100 bases:

>100_bases
CTGTTTATTTTATGTAAATTTTCATAAATTTCTCAAACGAAGAACACTTAACTATTATTAAGTTCAATCTTAAGATTAAT
GGATAGGAGGGAATAAAACT

Downstream 100 bases:

>100_bases
AAATGTATTAAAATTGAAAAAAATTATAAAGGATTGTAAAGGCTAGAAAGGACCAGAATTATGAAAATGAAAAAGGCCTT
CCATCCTCTCTTTATTTTAT

Product: stomatin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MVDFIGELTLPVLIVVILILSQSIKMVNEYERVVIFRLGRLSGVKGPGIFLIIPIIDKAIKIDLRVIAIDVPKQAVITRD
NVTVEVDAVVYYKVVEPGAAITQVENYMFATSTLSQTTLRDVLGQMELDELLSERENINKQIQELLDAYTDPWGIKVTGV
TIRDVSLPETMKRAIAKQAEAEREKRARIILAEGEFQAAERMKDAATLYQGVPTAIKLRELQTLAEIAREKNLIVVTESK
SPDTGNIAALSKAISEKKEL

Sequences:

>Translated_260_residues
MVDFIGELTLPVLIVVILILSQSIKMVNEYERVVIFRLGRLSGVKGPGIFLIIPIIDKAIKIDLRVIAIDVPKQAVITRD
NVTVEVDAVVYYKVVEPGAAITQVENYMFATSTLSQTTLRDVLGQMELDELLSERENINKQIQELLDAYTDPWGIKVTGV
TIRDVSLPETMKRAIAKQAEAEREKRARIILAEGEFQAAERMKDAATLYQGVPTAIKLRELQTLAEIAREKNLIVVTESK
SPDTGNIAALSKAISEKKEL
>Mature_260_residues
MVDFIGELTLPVLIVVILILSQSIKMVNEYERVVIFRLGRLSGVKGPGIFLIIPIIDKAIKIDLRVIAIDVPKQAVITRD
NVTVEVDAVVYYKVVEPGAAITQVENYMFATSTLSQTTLRDVLGQMELDELLSERENINKQIQELLDAYTDPWGIKVTGV
TIRDVSLPETMKRAIAKQAEAEREKRARIILAEGEFQAAERMKDAATLYQGVPTAIKLRELQTLAEIAREKNLIVVTESK
SPDTGNIAALSKAISEKKEL

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=231, Percent_Identity=47.6190476190476, Blast_Score=192, Evalue=3e-49,
Organism=Homo sapiens, GI21686995, Length=234, Percent_Identity=43.5897435897436, Blast_Score=185, Evalue=4e-47,
Organism=Homo sapiens, GI221316744, Length=234, Percent_Identity=43.5897435897436, Blast_Score=185, Evalue=4e-47,
Organism=Homo sapiens, GI7657615, Length=235, Percent_Identity=37.8723404255319, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI7305503, Length=175, Percent_Identity=36, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI20149563, Length=159, Percent_Identity=30.188679245283, Blast_Score=85, Evalue=6e-17,
Organism=Escherichia coli, GI1786697, Length=191, Percent_Identity=40.3141361256544, Blast_Score=142, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI17569493, Length=230, Percent_Identity=48.695652173913, Blast_Score=203, Evalue=7e-53,
Organism=Caenorhabditis elegans, GI193209764, Length=230, Percent_Identity=48.695652173913, Blast_Score=202, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI25153583, Length=231, Percent_Identity=48.4848484848485, Blast_Score=199, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17569497, Length=231, Percent_Identity=44.5887445887446, Blast_Score=199, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI71987612, Length=231, Percent_Identity=48.4848484848485, Blast_Score=199, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI71987621, Length=229, Percent_Identity=49.3449781659389, Blast_Score=197, Evalue=6e-51,
Organism=Caenorhabditis elegans, GI17569499, Length=225, Percent_Identity=49.7777777777778, Blast_Score=192, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI32566490, Length=225, Percent_Identity=48, Blast_Score=191, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI193210507, Length=229, Percent_Identity=46.2882096069869, Blast_Score=188, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI17570161, Length=229, Percent_Identity=46.2882096069869, Blast_Score=188, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=216, Percent_Identity=47.2222222222222, Blast_Score=181, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17570459, Length=231, Percent_Identity=44.1558441558442, Blast_Score=178, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=50, Blast_Score=164, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=51.6949152542373, Blast_Score=131, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI32564147, Length=181, Percent_Identity=39.2265193370166, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17542664, Length=160, Percent_Identity=31.875, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI45556022, Length=231, Percent_Identity=48.0519480519481, Blast_Score=213, Evalue=1e-55,
Organism=Drosophila melanogaster, GI18860517, Length=237, Percent_Identity=47.2573839662447, Blast_Score=203, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24657857, Length=231, Percent_Identity=49.7835497835498, Blast_Score=193, Evalue=1e-49,
Organism=Drosophila melanogaster, GI281365664, Length=231, Percent_Identity=49.7835497835498, Blast_Score=192, Evalue=1e-49,
Organism=Drosophila melanogaster, GI62484448, Length=231, Percent_Identity=49.7835497835498, Blast_Score=192, Evalue=2e-49,
Organism=Drosophila melanogaster, GI62484274, Length=231, Percent_Identity=49.7835497835498, Blast_Score=191, Evalue=5e-49,
Organism=Drosophila melanogaster, GI281361633, Length=233, Percent_Identity=38.6266094420601, Blast_Score=177, Evalue=9e-45,
Organism=Drosophila melanogaster, GI281361631, Length=233, Percent_Identity=38.6266094420601, Blast_Score=176, Evalue=1e-44,
Organism=Drosophila melanogaster, GI28573263, Length=234, Percent_Identity=40.5982905982906, Blast_Score=172, Evalue=1e-43,
Organism=Drosophila melanogaster, GI21356845, Length=225, Percent_Identity=36.8888888888889, Blast_Score=169, Evalue=2e-42,
Organism=Drosophila melanogaster, GI45550506, Length=190, Percent_Identity=37.8947368421053, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI281361635, Length=173, Percent_Identity=38.728323699422, Blast_Score=130, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28902; Mature: 28902

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDFIGELTLPVLIVVILILSQSIKMVNEYERVVIFRLGRLSGVKGPGIFLIIPIIDKAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCHH
KIDLRVIAIDVPKQAVITRDNVTVEVDAVVYYKVVEPGAAITQVENYMFATSTLSQTTLR
EEEEEEEEEECCCHHEEEECCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
DVLGQMELDELLSERENINKQIQELLDAYTDPWGIKVTGVTIRDVSLPETMKRAIAKQAE
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
AEREKRARIILAEGEFQAAERMKDAATLYQGVPTAIKLRELQTLAEIAREKNLIVVTESK
HHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
SPDTGNIAALSKAISEKKEL
CCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MVDFIGELTLPVLIVVILILSQSIKMVNEYERVVIFRLGRLSGVKGPGIFLIIPIIDKAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCHH
KIDLRVIAIDVPKQAVITRDNVTVEVDAVVYYKVVEPGAAITQVENYMFATSTLSQTTLR
EEEEEEEEEECCCHHEEEECCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
DVLGQMELDELLSERENINKQIQELLDAYTDPWGIKVTGVTIRDVSLPETMKRAIAKQAE
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
AEREKRARIILAEGEFQAAERMKDAATLYQGVPTAIKLRELQTLAEIAREKNLIVVTESK
HHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
SPDTGNIAALSKAISEKKEL
CCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]