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The map label for this gene is 21228114

Identifier: 21228114

GI number: 21228114

Start: 2398181

End: 2398729

Strand: Reverse

Name: 21228114

Synonym: MM_2012

Alternate gene names: NA

Gene position: 2398729-2398181 (Counterclockwise)

Preceding gene: 21228115

Following gene: 21228103

Centisome position: 58.56

GC content: 44.81

Gene sequence:

>549_bases
ATGACTCAGTATGTCAAAATCCCCAGAGAAAGAATCGGAGTAATCATCGGTCCTAAAGGAGAAATAAAAAAACTCATAGA
GGACAAAACCACATGCCAGCTGGAAATAGAGAGTGATAGCGGAAAAATCGATGTTACCTGCGAGGGAGACCCTTTAAAAG
AATTCAGGGTCCTTGAAACCATCAAAGCTATTGGAAGAGGTTTCAGCCCGGAAAAAGCTCTTGAAATCCTTGATGATGAG
ATGCTCATGCTTGAAGTGATTGACCTTTCAGATGTTGCCACAACTCCAAAAGAGCTCCAGCGCATAAAAGGAAGGATTAT
CGGAAGGAACGGGCGGACTAGAGAGCTTGCGGAAAGCCTGATAAATGTCAAGATCTCGGTATACGGAAAAACCGTATCCG
TACTCGGCTACCCCGAACAGAACACCATAATACGGACAGCAATAAAGATGCTGCTCGATGGAGCCACTCACGGCGCGGTC
TACAAATTCCTTGAAAAAAAACATCAGGAACTTCTGCACTCGCAGCTGGACTCGGTAGACTTTTACTAA

Upstream 100 bases:

>100_bases
TTCTCTACAGAGACGTGCTAAATATACTCAGGTTCTTTGGCCGCTATGGGATCACGGACAAACCTGAAGAACTGCTTTCA
AAAATACAGGCGGAAACAAC

Downstream 100 bases:

>100_bases
AAAAAGAAAGACCATTACAATAATTAATTAAAAAAGGAGAGTTCCGGAATCTTATTCTTATCCGGCCTCTTCTTAATCTT
CTTCTGACATTTTTCCTTTG

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTQYVKIPRERIGVIIGPKGEIKKLIEDKTTCQLEIESDSGKIDVTCEGDPLKEFRVLETIKAIGRGFSPEKALEILDDE
MLMLEVIDLSDVATTPKELQRIKGRIIGRNGRTRELAESLINVKISVYGKTVSVLGYPEQNTIIRTAIKMLLDGATHGAV
YKFLEKKHQELLHSQLDSVDFY

Sequences:

>Translated_182_residues
MTQYVKIPRERIGVIIGPKGEIKKLIEDKTTCQLEIESDSGKIDVTCEGDPLKEFRVLETIKAIGRGFSPEKALEILDDE
MLMLEVIDLSDVATTPKELQRIKGRIIGRNGRTRELAESLINVKISVYGKTVSVLGYPEQNTIIRTAIKMLLDGATHGAV
YKFLEKKHQELLHSQLDSVDFY
>Mature_181_residues
TQYVKIPRERIGVIIGPKGEIKKLIEDKTTCQLEIESDSGKIDVTCEGDPLKEFRVLETIKAIGRGFSPEKALEILDDEM
LMLEVIDLSDVATTPKELQRIKGRIIGRNGRTRELAESLINVKISVYGKTVSVLGYPEQNTIIRTAIKMLLDGATHGAVY
KFLEKKHQELLHSQLDSVDFY

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 20486; Mature: 20355

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQYVKIPRERIGVIIGPKGEIKKLIEDKTTCQLEIESDSGKIDVTCEGDPLKEFRVLET
CCCCCCCCHHHCCEEECCCHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHH
IKAIGRGFSPEKALEILDDEMLMLEVIDLSDVATTPKELQRIKGRIIGRNGRTRELAESL
HHHHHCCCCHHHHHHHHCCCEEEHEEECHHHHCCCHHHHHHHHCEEECCCCCHHHHHHHH
INVKISVYGKTVSVLGYPEQNTIIRTAIKMLLDGATHGAVYKFLEKKHQELLHSQLDSVD
HHEEEEEECCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
FY
CC
>Mature Secondary Structure 
TQYVKIPRERIGVIIGPKGEIKKLIEDKTTCQLEIESDSGKIDVTCEGDPLKEFRVLET
CCCCCCCHHHCCEEECCCHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHH
IKAIGRGFSPEKALEILDDEMLMLEVIDLSDVATTPKELQRIKGRIIGRNGRTRELAESL
HHHHHCCCCHHHHHHHHCCCEEEHEEECHHHHCCCHHHHHHHHCEEECCCCCHHHHHHHH
INVKISVYGKTVSVLGYPEQNTIIRTAIKMLLDGATHGAVYKFLEKKHQELLHSQLDSVD
HHEEEEEECCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
FY
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]