| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228104
Identifier: 21228104
GI number: 21228104
Start: 2385083
End: 2386777
Strand: Direct
Name: 21228104
Synonym: MM_2002
Alternate gene names: NA
Gene position: 2385083-2386777 (Clockwise)
Preceding gene: 21228088
Following gene: 21228105
Centisome position: 58.22
GC content: 45.07
Gene sequence:
>1695_bases GTGGTTTTATTTATTACCATTCCTTCAGAGGGTGCTATTGAACAGCGGGGCCAGCTTATAAGCATCGCAGCGGGAGACCA TCACATTCTCAATGCGGAAAATTGCCCGGGGTTTTATTATTCAACAACTTCAGGAACATATTATGAAACTCTGGAGCTTA CTTTTGCCGAAGACGGGTTTATTGACACCGGAGACGCAATCTATACTTCCAAAATCACTTCCGGTTCAACTGCTTTTTTT GGGAAGAAATATAAGGTTCTTGAGGACGGGCTGCTCAGTGAGAGCCTCATCAGTTCCGGAAGCCGTGATCTTCAAAGGGG AAACGATTTTGATCTCGGGCACGGATGTAAACTGGTTCTTCAGGGCATAAACGGGAATTATGCCCTTCTCGAGCTCCAGA AAAATTCCGTGCAGGTTACCACAAAAACCGTGGAAGAAGGTTCCAAATTTAATTTCACGACAGAGGTCGACGGCAAAGAG TATGTTATCCTTGAAGGGACCCTGGAAAAGGTTCTTGACAGCAGGGACCCTATAGTGCGCCTTAAAAGCGTAAACCATTA TTCGGATACTCCTCGCAGGATTGAAAAAGGGGATGAATACGGAAAGTTCGAAGTCAGCTCGGTTACAAATAAGAGTATAG AATTGAAAAACAAAGCACCTATCAGGATGCAGCCCGGGGACCACATAACCGTCCTTGACAACCTGATTGATTTGAGAGTT GCTGATACTGTTTACAGGGCATGTTCTTACAACATGACCCAGGACACTATAAAATCGTATAAAATCAGGGGCACATCCTT AACTGTAAACCGGTCTGATTCCTATCCTGACGCCTGCAACTGGACAGCAGATTCTTTTGGCATGCTATTCTATGACCCGG AATACGACCTCAGTACGGAAAGCCTCAGCATAACGCTTGACGCCGGAAACGACTGGGTCCCCGAAGGAGGCCTTGTTTAT GAATCCCTGCCTGTTAAGGTAACTTATGAAAACCCGGAAATGATGGATTACGGAACAGACTGGTTTAATCAGGGATACTC AGCGCTTGGCTGGAACGGTGAAGAATACGCATACCTCGGAACTGATAGAGGTATTGTAAATATCCTTCTGGAAGAAGATG AGAAAATCCTCTACCCGAATGAAGAATACGACCTTAAAGAAGGGTATACCCTGAAAGTTACAGATCTGGCATCGGATAAA GCCTGCCTCACTCTTTCCAGGAACAAACTCCCGGTTTATTCAAGCATAATCTCTCCCGGTAAATCCGCTGACCTGGGAAC TCACACTTTCCTCTACAAAAAGGAATTAAATGGTGTGGAGGTGCCCCTTTTTTCAGTATATGTTGACAGTGTAATACAGG GAGATGAACTCTCTGCTGTTAACCTGAAACACCTCCTGCACTTCTCTGACAGCCCGCTTGAGCTGAATTACGGAAAGGAG TACGGAGAGCTTACTATTGTTGAAACATATCCGAAACTCAGGCTCGAAAATAAGCATGTGGTCTGGTCCGGTTCGGATAT CAATGTAACGGAGGATATCTGGATTGGAAGGTTTGAAAAGAAGACCGCGGGGAATCTCTTTGTTACCTTTTACCCTTACA TGAATAAGGTGGAAAATGTAAGGTCCATCCTTCCGTCCGTTTCAAGCTGGTCCATACCGGCTATGAGTATTGAAGAATAC CTGATAGGAGTCTGA
Upstream 100 bases:
>100_bases GAAAAGATTATTTAGTAATACTATTCATGCTATTCTTATGGATATTATTGATGATAATCGTATTATTTTACCATTTAAGT ATTCAGTTTTTTTTCTAATA
Downstream 100 bases:
>100_bases AAATAAACCGGGGCAAAAATATGAAGAACCATAATATTGCTGTCTATCCCTTTACCGCCATAGTCGGGCAGGAGAAAATG AAAAAAGCCCTTGTCCTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 564; Mature: 564
Protein sequence:
>564_residues MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGFIDTGDAIYTSKITSGSTAFF GKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVLQGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKE YVILEGTLEKVLDSRDPIVRLKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTESLSITLDAGNDWVPEGGLVY ESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLGTDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDK ACLTLSRNKLPVYSSIISPGKSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENVRSILPSVSSWSIPAMSIEEY LIGV
Sequences:
>Translated_564_residues MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGFIDTGDAIYTSKITSGSTAFF GKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVLQGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKE YVILEGTLEKVLDSRDPIVRLKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTESLSITLDAGNDWVPEGGLVY ESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLGTDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDK ACLTLSRNKLPVYSSIISPGKSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENVRSILPSVSSWSIPAMSIEEY LIGV >Mature_564_residues MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGFIDTGDAIYTSKITSGSTAFF GKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVLQGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKE YVILEGTLEKVLDSRDPIVRLKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTESLSITLDAGNDWVPEGGLVY ESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLGTDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDK ACLTLSRNKLPVYSSIISPGKSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENVRSILPSVSSWSIPAMSIEEY LIGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63186; Mature: 63186
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGF CEEEEEECCCCCHHHCCCEEEEECCCCEEECCCCCCCEEEECCCCCEEEEEEEEEECCCC IDTGDAIYTSKITSGSTAFFGKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVL EECCCEEEEEEECCCCEEECCCEEEHHHCCCHHHHHHCCCCHHHHCCCCCCCCCCEEEEE QGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKEYVILEGTLEKVLDSRDPIVR EECCCCEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCCEEE LKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV EEECCCCCCCCHHHHCCCCCCCEEEECCCCCEEEECCCCCEEECCCCEEEEEHHHHHHHH ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTE HHHHHHHHCCCCCHHHHHHEEEECEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCC SLSITLDAGNDWVPEGGLVYESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLG EEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCEECCCHHHHCCCCEECCCCCEEEEEE TDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDKACLTLSRNKLPVYSSIISPG CCCCEEEEEEECCCEEECCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCC KSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE CCCCCCCEEEEEEECCCCCCCCHHHEEHHHHHCCCCCCEECHHHHEECCCCCEEEECCCC YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENV CCCEEEEECCCCEEECCCEEEEECCCCCEEHHHEEECCCCCCCCCEEEEECCHHHHHHHH RSILPSVSSWSIPAMSIEEYLIGV HHHCCCCCCCCCCCEEHHHHHCCC >Mature Secondary Structure MVLFITIPSEGAIEQRGQLISIAAGDHHILNAENCPGFYYSTTSGTYYETLELTFAEDGF CEEEEEECCCCCHHHCCCEEEEECCCCEEECCCCCCCEEEECCCCCEEEEEEEEEECCCC IDTGDAIYTSKITSGSTAFFGKKYKVLEDGLLSESLISSGSRDLQRGNDFDLGHGCKLVL EECCCEEEEEEECCCCEEECCCEEEHHHCCCHHHHHHCCCCHHHHCCCCCCCCCCEEEEE QGINGNYALLELQKNSVQVTTKTVEEGSKFNFTTEVDGKEYVILEGTLEKVLDSRDPIVR EECCCCEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEEECCHHHHHHCCCCCEEE LKSVNHYSDTPRRIEKGDEYGKFEVSSVTNKSIELKNKAPIRMQPGDHITVLDNLIDLRV EEECCCCCCCCHHHHCCCCCCCEEEECCCCCEEEECCCCCEEECCCCEEEEEHHHHHHHH ADTVYRACSYNMTQDTIKSYKIRGTSLTVNRSDSYPDACNWTADSFGMLFYDPEYDLSTE HHHHHHHHCCCCCHHHHHHEEEECEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCC SLSITLDAGNDWVPEGGLVYESLPVKVTYENPEMMDYGTDWFNQGYSALGWNGEEYAYLG EEEEEEECCCCCCCCCCEEEECCEEEEEECCCCCEECCCHHHHCCCCEECCCCCEEEEEE TDRGIVNILLEEDEKILYPNEEYDLKEGYTLKVTDLASDKACLTLSRNKLPVYSSIISPG CCCCEEEEEEECCCEEECCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCC KSADLGTHTFLYKKELNGVEVPLFSVYVDSVIQGDELSAVNLKHLLHFSDSPLELNYGKE CCCCCCCEEEEEEECCCCCCCCHHHEEHHHHHCCCCCCEECHHHHEECCCCCEEEECCCC YGELTIVETYPKLRLENKHVVWSGSDINVTEDIWIGRFEKKTAGNLFVTFYPYMNKVENV CCCEEEEECCCCEEECCCEEEEECCCCCEEHHHEEECCCCCCCCCEEEEECCHHHHHHHH RSILPSVSSWSIPAMSIEEYLIGV HHHCCCCCCCCCCCEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA