| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228088
Identifier: 21228088
GI number: 21228088
Start: 2365683
End: 2366636
Strand: Direct
Name: 21228088
Synonym: MM_1986
Alternate gene names: NA
Gene position: 2365683-2366636 (Clockwise)
Preceding gene: 21228087
Following gene: 21228104
Centisome position: 57.75
GC content: 46.33
Gene sequence:
>954_bases GTGTCTCTCCCCATAAAATGGGTCCGGGATATAGGGCTTGAAGCCGGAGATACCCTTACTCTCACTCCCATGCCTAACAA AACACTGCTTGTTTCCTCAAGTGCAATTTCTAAAGATCATTCCGTCCTTAAGGCAACTATAGACTATCTTCATTCCGATA GTGCAGAAAACAACTTAAGGATCCTTATTTCACATTACCTTGTAGGTTACGATGTAATCAGGCTGACCACAAAAAAAGGT TTCAGTGCCTATGACCGCAAGTTTATAAAGGACTCCGTGCGCCAGAAACTCATAGGTCTCGAGCTTGTGGAAGAGTCCAG GAACGAACTTGTTTTCCAGTGCCTCCTGAACTACAATGACCTGCCTCTTAACCGTGTAATCAAAAACATGTACGGTCTCG TCCTTTCAATGCTTGAGGATTCCATGACCGCCCTTCGGGACCATAATGTGGAAATTGCCGAAGACGTAATCCAGAGAGAC GACGATGTGGACCGCTTCTACTTATTAGCCGTCCGCCAGCTCAAAGCCTCGATTGAGGACATAGAGCTCTCGGAAAAGAT AGGAATCAGGCACCCGCGAGAATGTCTCGGGTACAGGCTTATTACCAAGAGCATTGAGCGTGTGGGAGACCATGCTGTAA GGATCGCCAGAAATGTCCTTAAAATGGATTCCGGGATCAGCAGTGATGACCCTATTTTCAAGATGGCTGACCTCTCAAGG AAAGTGTTTGAGAGTTCCATAGATTCCATGCAGGAGGAGGACCTTCAGGCTATAAACAAAATAGTTGTTGAAGCCAAAAA AGTTTCCCAGTTTGGCGTTTCCCTCGAGTCCAGAGGCGACGAAGGTGAAGGCAGCATTGAGCTCAGCATGGTTCTTGAAA GCCTGCGCAGGGTAGCCGAATACAGTGCCGATATCGCAGAAGTAGCAATTAATATGAATATAAAACAGATCTGA
Upstream 100 bases:
>100_bases TCTATATAGATTTTGTAATATTCATTACTCTCTTCAAGGGGGCCTATTTATTACCAAGGATAAAAGAAAAGTCCAGTTTA CAGGAAATTCTACTTATATT
Downstream 100 bases:
>100_bases GTAATCAGATCTAAAAACAGATCCGAACCAAAAGGTTCTGCTCTGTCCTTTTTTTGCTCTGTCTTTTTTATTTCTTTTTC TACCTTATATTTTCTTACTC
Product: putative regulatory protein
Products: NA
Alternate protein names: Transcription Regulator; Phosphate Uptake Regulator; Phosphate Regulatory Protein; SpoVT/AbrB Domain-Containing Protein; ABC Transport System Regulatory Protein; Transport System Regulatory Protein; ABC Transporter; Regulatory Protein; Phosphate Regulatory Protein-Like; Phosphate Transport System Protein
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MSLPIKWVRDIGLEAGDTLTLTPMPNKTLLVSSSAISKDHSVLKATIDYLHSDSAENNLRILISHYLVGYDVIRLTTKKG FSAYDRKFIKDSVRQKLIGLELVEESRNELVFQCLLNYNDLPLNRVIKNMYGLVLSMLEDSMTALRDHNVEIAEDVIQRD DDVDRFYLLAVRQLKASIEDIELSEKIGIRHPRECLGYRLITKSIERVGDHAVRIARNVLKMDSGISSDDPIFKMADLSR KVFESSIDSMQEEDLQAINKIVVEAKKVSQFGVSLESRGDEGEGSIELSMVLESLRRVAEYSADIAEVAINMNIKQI
Sequences:
>Translated_317_residues MSLPIKWVRDIGLEAGDTLTLTPMPNKTLLVSSSAISKDHSVLKATIDYLHSDSAENNLRILISHYLVGYDVIRLTTKKG FSAYDRKFIKDSVRQKLIGLELVEESRNELVFQCLLNYNDLPLNRVIKNMYGLVLSMLEDSMTALRDHNVEIAEDVIQRD DDVDRFYLLAVRQLKASIEDIELSEKIGIRHPRECLGYRLITKSIERVGDHAVRIARNVLKMDSGISSDDPIFKMADLSR KVFESSIDSMQEEDLQAINKIVVEAKKVSQFGVSLESRGDEGEGSIELSMVLESLRRVAEYSADIAEVAINMNIKQI >Mature_316_residues SLPIKWVRDIGLEAGDTLTLTPMPNKTLLVSSSAISKDHSVLKATIDYLHSDSAENNLRILISHYLVGYDVIRLTTKKGF SAYDRKFIKDSVRQKLIGLELVEESRNELVFQCLLNYNDLPLNRVIKNMYGLVLSMLEDSMTALRDHNVEIAEDVIQRDD DVDRFYLLAVRQLKASIEDIELSEKIGIRHPRECLGYRLITKSIERVGDHAVRIARNVLKMDSGISSDDPIFKMADLSRK VFESSIDSMQEEDLQAINKIVVEAKKVSQFGVSLESRGDEGEGSIELSMVLESLRRVAEYSADIAEVAINMNIKQI
Specific function: Unknown
COG id: COG0704
COG function: function code P; Phosphate uptake regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35834; Mature: 35702
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPIKWVRDIGLEAGDTLTLTPMPNKTLLVSSSAISKDHSVLKATIDYLHSDSAENNLR CCCCHHHHHHCCCCCCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCHH ILISHYLVGYDVIRLTTKKGFSAYDRKFIKDSVRQKLIGLELVEESRNELVFQCLLNYND HHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LPLNRVIKNMYGLVLSMLEDSMTALRDHNVEIAEDVIQRDDDVDRFYLLAVRQLKASIED CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IELSEKIGIRHPRECLGYRLITKSIERVGDHAVRIARNVLKMDSGISSDDPIFKMADLSR HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH KVFESSIDSMQEEDLQAINKIVVEAKKVSQFGVSLESRGDEGEGSIELSMVLESLRRVAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHH YSADIAEVAINMNIKQI HCCHHHHHHHCCCCCCC >Mature Secondary Structure SLPIKWVRDIGLEAGDTLTLTPMPNKTLLVSSSAISKDHSVLKATIDYLHSDSAENNLR CCCHHHHHHCCCCCCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCHH ILISHYLVGYDVIRLTTKKGFSAYDRKFIKDSVRQKLIGLELVEESRNELVFQCLLNYND HHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LPLNRVIKNMYGLVLSMLEDSMTALRDHNVEIAEDVIQRDDDVDRFYLLAVRQLKASIED CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IELSEKIGIRHPRECLGYRLITKSIERVGDHAVRIARNVLKMDSGISSDDPIFKMADLSR HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH KVFESSIDSMQEEDLQAINKIVVEAKKVSQFGVSLESRGDEGEGSIELSMVLESLRRVAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHH YSADIAEVAINMNIKQI HCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA