| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228093
Identifier: 21228093
GI number: 21228093
Start: 2369634
End: 2370422
Strand: Reverse
Name: 21228093
Synonym: MM_1991
Alternate gene names: NA
Gene position: 2370422-2369634 (Counterclockwise)
Preceding gene: 21228094
Following gene: 21228092
Centisome position: 57.87
GC content: 43.22
Gene sequence:
>789_bases ATGAAGAAGCTGCTGTCTTTGCTGCTACTTATTTCAGTAATTATTATATCTGGTTGTGCATCGACAATAAAGGCAAACTC ACCGGTCAGTCCGGAAGAACTGGTTGTGAGCATCGAGCCCCTGGTAATGAAAGAGTTTAATGAACAGGATGTTTCCGTAA AGGTGTTAAATAATAACAGCACCCAGAAAATTGACTCGGTGTCTGTAAGTTCTTTTGATCCGTTTACTATTGTGGGTCCG AGTCCACAGATTAACATTCCTGCGGAAAGCAAGGCTGCTTTAAGTTTCAGGGTTATGGCTCCCTCTTTTGAGAAGAACAC TTCGATGCTAACAGTGTCTTACGCTTCTGGTATTGATGAAAAAGAACAGCCCATAATCAGGACGAAAGTTGTTCCTGTCC AGATGGTTGTCCTTCCTGATGCAAAACTTCAATTTGTCGGCTTTGCAGAAAGCATGGACAATCTGCGCAAATCTCCACCG GTTTCTGCCTGGGAAACAAAGAAAGGGGAGAATATAACGGTGAAGTTTTCTGTAAAGAACCATGGGCAATCAACCATAGC CGGAAATTCCATGTATGTGGTAGTAGACATAGAAAACAAGATGATAGGGAACAGCTCGACTGTCAATATCACCGAAGCGA TGGCAAAAGGTGGAACTTCCTATACAAGGGGTGTGGAACTTCCTGTCCAGAAAGATGCCCCCAACGGGGAAACCAATGTG TACGTAAATCTGATGAAAGGGGATTACCTGCTTGACTCCCAGACCCTTGTACTTAAAGTAAAACTATAA
Upstream 100 bases:
>100_bases TTGAATTTCATTTTTAGGCAAGGGAATGTTAGACTCTTCCTGTATTTGCCCAATAGTTACAGGATAATACCCGGATATAA GATTTGAGGAGGATACAAAC
Downstream 100 bases:
>100_bases TCCGGATCTGGTCCTCATGAGATTCAGGCAACGAATAAAACCCGGAAAATCCCCTCTTTTATTATCTGGCGGATTTTTAA TCAGCATTTTGCTGATTATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MKKLLSLLLLISVIIISGCASTIKANSPVSPEELVVSIEPLVMKEFNEQDVSVKVLNNNSTQKIDSVSVSSFDPFTIVGP SPQINIPAESKAALSFRVMAPSFEKNTSMLTVSYASGIDEKEQPIIRTKVVPVQMVVLPDAKLQFVGFAESMDNLRKSPP VSAWETKKGENITVKFSVKNHGQSTIAGNSMYVVVDIENKMIGNSSTVNITEAMAKGGTSYTRGVELPVQKDAPNGETNV YVNLMKGDYLLDSQTLVLKVKL
Sequences:
>Translated_262_residues MKKLLSLLLLISVIIISGCASTIKANSPVSPEELVVSIEPLVMKEFNEQDVSVKVLNNNSTQKIDSVSVSSFDPFTIVGP SPQINIPAESKAALSFRVMAPSFEKNTSMLTVSYASGIDEKEQPIIRTKVVPVQMVVLPDAKLQFVGFAESMDNLRKSPP VSAWETKKGENITVKFSVKNHGQSTIAGNSMYVVVDIENKMIGNSSTVNITEAMAKGGTSYTRGVELPVQKDAPNGETNV YVNLMKGDYLLDSQTLVLKVKL >Mature_262_residues MKKLLSLLLLISVIIISGCASTIKANSPVSPEELVVSIEPLVMKEFNEQDVSVKVLNNNSTQKIDSVSVSSFDPFTIVGP SPQINIPAESKAALSFRVMAPSFEKNTSMLTVSYASGIDEKEQPIIRTKVVPVQMVVLPDAKLQFVGFAESMDNLRKSPP VSAWETKKGENITVKFSVKNHGQSTIAGNSMYVVVDIENKMIGNSSTVNITEAMAKGGTSYTRGVELPVQKDAPNGETNV YVNLMKGDYLLDSQTLVLKVKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28412; Mature: 28412
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLSLLLLISVIIISGCASTIKANSPVSPEELVVSIEPLVMKEFNEQDVSVKVLNNNS CHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHEEEEECHHHHCCCCCCCCEEEEECCCC TQKIDSVSVSSFDPFTIVGPSPQINIPAESKAALSFRVMAPSFEKNTSMLTVSYASGIDE CCEEEEEECCCCCCEEEECCCCCEECCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCC KEQPIIRTKVVPVQMVVLPDAKLQFVGFAESMDNLRKSPPVSAWETKKGENITVKFSVKN CCCCEEEEEEEEEEEEEECCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC HGQSTIAGNSMYVVVDIENKMIGNSSTVNITEAMAKGGTSYTRGVELPVQKDAPNGETNV CCCEEEECCEEEEEEEECCCCCCCCCEEEHHHHHHCCCCCCCCCEECCCCCCCCCCCCEE YVNLMKGDYLLDSQTLVLKVKL EEEEEECCEEECCCEEEEEEEC >Mature Secondary Structure MKKLLSLLLLISVIIISGCASTIKANSPVSPEELVVSIEPLVMKEFNEQDVSVKVLNNNS CHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHEEEEECHHHHCCCCCCCCEEEEECCCC TQKIDSVSVSSFDPFTIVGPSPQINIPAESKAALSFRVMAPSFEKNTSMLTVSYASGIDE CCEEEEEECCCCCCEEEECCCCCEECCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCC KEQPIIRTKVVPVQMVVLPDAKLQFVGFAESMDNLRKSPPVSAWETKKGENITVKFSVKN CCCCEEEEEEEEEEEEEECCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC HGQSTIAGNSMYVVVDIENKMIGNSSTVNITEAMAKGGTSYTRGVELPVQKDAPNGETNV CCCEEEECCEEEEEEEECCCCCCCCCEEEHHHHHHCCCCCCCCCEECCCCCCCCCCCCEE YVNLMKGDYLLDSQTLVLKVKL EEEEEECCEEECCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA