| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228077
Identifier: 21228077
GI number: 21228077
Start: 2346226
End: 2346816
Strand: Reverse
Name: 21228077
Synonym: MM_1975
Alternate gene names: NA
Gene position: 2346816-2346226 (Counterclockwise)
Preceding gene: 21228080
Following gene: 21228076
Centisome position: 57.29
GC content: 42.64
Gene sequence:
>591_bases TTGGAATGTCAAGATATTATTCAGGATGTCCTTTGCAGGATAAAAGCCATGAAAGGCGTGGAAGAAACATACATTTTAAA TGAAGAAGATAAGGAAAAAATACTTGAGCTCGAGAAAAAAGCCGAAGGCGCGGTTTTGATGGGCATGGGAATAGGAGATA ATCAGGGGATCAAGGAGGTTCTTAAACGCCAGTTAATCATAGCCTTTACGACCAACATGGACTACGTATGGCCTGAAGGA CCCAATGTGATTCTAATGCAGTACGGGGAAAAAGTAGGCGAAGATGTTTATGACCCCGAAAAACTCGAGGAATGTAAAAA GTGCAGGGATATGGTTGTGATGGGGAATTTTGTAATTTACAGAAGTGCAGTACCAAAGCCAAAAGATGCAAAGAAAGAAC CTATCACTGTAGTGCTCCCCCCACAAAAATGTGAAGATTTAGAGTGTGTAGAGGGGTTAACCGGTATAGTAATGGCATCT CCTTCTACCCCTACGGATGAGTACATCAGGTCTGTAATGGGGCTTAGACCAGCAACGGGGATGGGAACTTTTATCATAGG ATTCGACCTCTGCGAAGCGAAATCAGATTAA
Upstream 100 bases:
>100_bases TGAAGATAGTGAGCCCTGATATTCATTAATGGGAGCTATATAAGACTTATTTATATCTGAACAGCTCAACATAGGATAAA AATAACAAGGTGTATCAGTT
Downstream 100 bases:
>100_bases AGGGAAATTCACCAATAAAGAGGTTTTACAAAAAGGAATTATAATATAGTCAGTTGAGTACAGTTGATCAACTGACTATA TTATAGTGCAGCTGGACCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MECQDIIQDVLCRIKAMKGVEETYILNEEDKEKILELEKKAEGAVLMGMGIGDNQGIKEVLKRQLIIAFTTNMDYVWPEG PNVILMQYGEKVGEDVYDPEKLEECKKCRDMVVMGNFVIYRSAVPKPKDAKKEPITVVLPPQKCEDLECVEGLTGIVMAS PSTPTDEYIRSVMGLRPATGMGTFIIGFDLCEAKSD
Sequences:
>Translated_196_residues MECQDIIQDVLCRIKAMKGVEETYILNEEDKEKILELEKKAEGAVLMGMGIGDNQGIKEVLKRQLIIAFTTNMDYVWPEG PNVILMQYGEKVGEDVYDPEKLEECKKCRDMVVMGNFVIYRSAVPKPKDAKKEPITVVLPPQKCEDLECVEGLTGIVMAS PSTPTDEYIRSVMGLRPATGMGTFIIGFDLCEAKSD >Mature_196_residues MECQDIIQDVLCRIKAMKGVEETYILNEEDKEKILELEKKAEGAVLMGMGIGDNQGIKEVLKRQLIIAFTTNMDYVWPEG PNVILMQYGEKVGEDVYDPEKLEECKKCRDMVVMGNFVIYRSAVPKPKDAKKEPITVVLPPQKCEDLECVEGLTGIVMAS PSTPTDEYIRSVMGLRPATGMGTFIIGFDLCEAKSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21904; Mature: 21904
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 9.2 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 9.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MECQDIIQDVLCRIKAMKGVEETYILNEEDKEKILELEKKAEGAVLMGMGIGDNQGIKEV CCHHHHHHHHHHHHHHHCCCHHHEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH LKRQLIIAFTTNMDYVWPEGPNVILMQYGEKVGEDVYDPEKLEECKKCRDMVVMGNFVIY HHHHEEEEEECCCCEECCCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEE RSAVPKPKDAKKEPITVVLPPQKCEDLECVEGLTGIVMASPSTPTDEYIRSVMGLRPATG ECCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCC MGTFIIGFDLCEAKSD CCEEEEEEEHHCCCCC >Mature Secondary Structure MECQDIIQDVLCRIKAMKGVEETYILNEEDKEKILELEKKAEGAVLMGMGIGDNQGIKEV CCHHHHHHHHHHHHHHHCCCHHHEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH LKRQLIIAFTTNMDYVWPEGPNVILMQYGEKVGEDVYDPEKLEECKKCRDMVVMGNFVIY HHHHEEEEEECCCCEECCCCCCEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEE RSAVPKPKDAKKEPITVVLPPQKCEDLECVEGLTGIVMASPSTPTDEYIRSVMGLRPATG ECCCCCCCCCCCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCC MGTFIIGFDLCEAKSD CCEEEEEEEHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA