| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228063
Identifier: 21228063
GI number: 21228063
Start: 2328909
End: 2331071
Strand: Reverse
Name: 21228063
Synonym: MM_1961
Alternate gene names: NA
Gene position: 2331071-2328909 (Counterclockwise)
Preceding gene: 21228064
Following gene: 21228060
Centisome position: 56.91
GC content: 43.64
Gene sequence:
>2163_bases GTGTCCGTTGCAATTGCTGCAGATGAGGATATACCTTTTGAGGATGACGGAAATTCAACGGTCTTACTGCCTGACCTGGT AATTGAGGATATTTCCCTGAGCACAAACTCTCCTGGTGCCGGGGAACAGATAACTGTTACAGCTACCGTCACAAATCAGG GGAATACAGCATCGGGATCAACAAACCTGAGATATTATAGCAACGGAAATAGGATCGGAGAAAGCCCAGTTCCTGAAATG GAAGCCGGAAAAAGTGAAGAAATATCGTTCTCATGGACCCCTGAAACCGAAAGTACAGCTGAGATAAGTGCGAAAGTAGA CGAAGAAAATCTGGTGGAAGAAGGAAATGAGGATAATAACGTCAAAACTGCAGGCTTCATCACTTTCAAAAAGGAAAACC TCCCGGACCTGATAATAAATTCGATTAACCACCCTCAATATCCCTCTCCAGGAAAGCCCAAGACCATAGGAATAAGTGTG ATAAACAATGGGGCTGCCAGTTCGGGAGAGACAAAACTTATGCTCTACATTGACGGAAGACCTGCTAGAGAATGGGACAT ACCCGGACTGTCAGGGGGGGAGAGTGCTTATAAATCGTATACCTGGATTCCGATATTAGAAGGATCTGCAGAAATAAAAG CCGTGGTTGACGAAAATAACCAGGTAACCGAGAGCGATGAGGAAAATAATGAAAAAACAGCCACCATAACAGTAGCAATA GATTTTCTTCCGGATCTGATAATTGAAGATATTGTTCCTGAGACTGAGGGAGAACTTGGAAAGCCGCTTAACCTGATTCT TAAAGTAAAAAACCAGGGAACTTTTGCCTCTGAAGAAGCTGTAGCAGAATACTACATTAACGGAACTGCCCCAGATCAGG AGGGTATAAATATTCCAGCCTTACCGGCAGGGACAGGGGCAGATGTCTCCTTCTCTCTGATTCCGGACAGAGAAGGGCAG ATGGAAGTAAAAGCGTTTATCGATTCCGGGACATATGTTTACGAAAGTAATGAAGACAATAACCAGTTTTCAAAAATCGT GAACGTAAAAACAAAACTCCCTGACCTGATAATCGAATCAGTCTCGTTAACCCCGGAAGCTCCCAGAATAGGAGATAGCG TTACTTTCACGGTATCGGTAAAGAACATAGGGCTCAGCGATTCTGGAAGCAGCGAACTGAGATATCAGATAAACGGAGCC AATAAAACCTACAGCAGCACATTATCAGTACCTCCGGTTGTCACAGGAGAAACCGTAAAAAGCACCTTTTCCTGGGTACC TGAAGAAGATGGGAATTTGAATATGGAACTTGTAGCTGACTCCGGAAGTGCTATACGTGAAGATGACGAGACAAACAATA AATTAACCAGGACTATCGCTGTCTCCAAACAGGCTACCTACACAAATGGAGGGAGCTCAGGTTCCGGTTCAGGAAGTGGC AGCAGTAGCAAAAGCAACAGCATGGGCAGCGGTGTTTCTAAAGAGCCTGCAAGAAATGTAGAAGTTAAAGAGCTGGATAC AAGAAACATCATGAGCGGTTACCATGTAAAATATGATTTTGCGAAAAATGCAACCTGTGTCACATATGTTGAATTTGAAC CCAGGAAGACGTTTAAGAAAACAACAGCAACTGTAGAAGTCCTCAAAGAGAAATCCATTTTTGTCCAGAAGCAGCCGCCT GGAAGAATATATAAGCAGCTTAACATCTGGTTGGGAAATAAAGGGGCAGGTCGTGAGGACTCTCTCAAAAATGCCTATAC AGGGTTCAAAGTGGAAAAGGATTGGATAAAAAATAACAGTGTTGAAGAATCCAATATAGCCCTCCTATGGTACGACAGTA AATGGAAGCCTCTGAAAACTGAAAAAACAGGTGAAGATGATGACTACGTTTATTTCAGGGCAGAAACCATTGCTTACTCC TGTTTTGCAATAGGCGAATATAAAGGAGAAGAGGGAACTGTGAAGGAGACCACCGACGACGAAGGAATACAGGAAACCCT GAGAAGCTGGGAAGGCGGCGGGAAGGCGATCCTGAACAGCAGTGCAGAAAGAGAAGACGATATTCAGAAGAAGCCGATGG GTGTAGCAAAGATACTTCTTGCGATCTCTCTGCCTCTGTTTATGATTCTTGTGGAATATTTCGTTCTGAAGAAAAAGATC TAA
Upstream 100 bases:
>100_bases ATTAATAGACGTGTGGGGGCGGAGGCTAATAAAAATGAAAATAAATTTTTTTCATTCTTTGGTCTATGTATTGATAATAA CGATTATAATTCCTGGAATT
Downstream 100 bases:
>100_bases AAAGGCTTAAAAGAACGAAAAAAGATTTTTTTCTTCACCTTTATTTTTCATTTTTACACCGAAGCCTGAGTATTTAAATG AAGGTGTTTAAATTCTGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 720; Mature: 719
Protein sequence:
>720_residues MSVAIAADEDIPFEDDGNSTVLLPDLVIEDISLSTNSPGAGEQITVTATVTNQGNTASGSTNLRYYSNGNRIGESPVPEM EAGKSEEISFSWTPETESTAEISAKVDEENLVEEGNEDNNVKTAGFITFKKENLPDLIINSINHPQYPSPGKPKTIGISV INNGAASSGETKLMLYIDGRPAREWDIPGLSGGESAYKSYTWIPILEGSAEIKAVVDENNQVTESDEENNEKTATITVAI DFLPDLIIEDIVPETEGELGKPLNLILKVKNQGTFASEEAVAEYYINGTAPDQEGINIPALPAGTGADVSFSLIPDREGQ MEVKAFIDSGTYVYESNEDNNQFSKIVNVKTKLPDLIIESVSLTPEAPRIGDSVTFTVSVKNIGLSDSGSSELRYQINGA NKTYSSTLSVPPVVTGETVKSTFSWVPEEDGNLNMELVADSGSAIREDDETNNKLTRTIAVSKQATYTNGGSSGSGSGSG SSSKSNSMGSGVSKEPARNVEVKELDTRNIMSGYHVKYDFAKNATCVTYVEFEPRKTFKKTTATVEVLKEKSIFVQKQPP GRIYKQLNIWLGNKGAGREDSLKNAYTGFKVEKDWIKNNSVEESNIALLWYDSKWKPLKTEKTGEDDDYVYFRAETIAYS CFAIGEYKGEEGTVKETTDDEGIQETLRSWEGGGKAILNSSAEREDDIQKKPMGVAKILLAISLPLFMILVEYFVLKKKI
Sequences:
>Translated_720_residues MSVAIAADEDIPFEDDGNSTVLLPDLVIEDISLSTNSPGAGEQITVTATVTNQGNTASGSTNLRYYSNGNRIGESPVPEM EAGKSEEISFSWTPETESTAEISAKVDEENLVEEGNEDNNVKTAGFITFKKENLPDLIINSINHPQYPSPGKPKTIGISV INNGAASSGETKLMLYIDGRPAREWDIPGLSGGESAYKSYTWIPILEGSAEIKAVVDENNQVTESDEENNEKTATITVAI DFLPDLIIEDIVPETEGELGKPLNLILKVKNQGTFASEEAVAEYYINGTAPDQEGINIPALPAGTGADVSFSLIPDREGQ MEVKAFIDSGTYVYESNEDNNQFSKIVNVKTKLPDLIIESVSLTPEAPRIGDSVTFTVSVKNIGLSDSGSSELRYQINGA NKTYSSTLSVPPVVTGETVKSTFSWVPEEDGNLNMELVADSGSAIREDDETNNKLTRTIAVSKQATYTNGGSSGSGSGSG SSSKSNSMGSGVSKEPARNVEVKELDTRNIMSGYHVKYDFAKNATCVTYVEFEPRKTFKKTTATVEVLKEKSIFVQKQPP GRIYKQLNIWLGNKGAGREDSLKNAYTGFKVEKDWIKNNSVEESNIALLWYDSKWKPLKTEKTGEDDDYVYFRAETIAYS CFAIGEYKGEEGTVKETTDDEGIQETLRSWEGGGKAILNSSAEREDDIQKKPMGVAKILLAISLPLFMILVEYFVLKKKI >Mature_719_residues SVAIAADEDIPFEDDGNSTVLLPDLVIEDISLSTNSPGAGEQITVTATVTNQGNTASGSTNLRYYSNGNRIGESPVPEME AGKSEEISFSWTPETESTAEISAKVDEENLVEEGNEDNNVKTAGFITFKKENLPDLIINSINHPQYPSPGKPKTIGISVI NNGAASSGETKLMLYIDGRPAREWDIPGLSGGESAYKSYTWIPILEGSAEIKAVVDENNQVTESDEENNEKTATITVAID FLPDLIIEDIVPETEGELGKPLNLILKVKNQGTFASEEAVAEYYINGTAPDQEGINIPALPAGTGADVSFSLIPDREGQM EVKAFIDSGTYVYESNEDNNQFSKIVNVKTKLPDLIIESVSLTPEAPRIGDSVTFTVSVKNIGLSDSGSSELRYQINGAN KTYSSTLSVPPVVTGETVKSTFSWVPEEDGNLNMELVADSGSAIREDDETNNKLTRTIAVSKQATYTNGGSSGSGSGSGS SSKSNSMGSGVSKEPARNVEVKELDTRNIMSGYHVKYDFAKNATCVTYVEFEPRKTFKKTTATVEVLKEKSIFVQKQPPG RIYKQLNIWLGNKGAGREDSLKNAYTGFKVEKDWIKNNSVEESNIALLWYDSKWKPLKTEKTGEDDDYVYFRAETIAYSC FAIGEYKGEEGTVKETTDDEGIQETLRSWEGGGKAILNSSAEREDDIQKKPMGVAKILLAISLPLFMILVEYFVLKKKI
Specific function: Unknown
COG id: COG1572
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78387; Mature: 78255
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVAIAADEDIPFEDDGNSTVLLPDLVIEDISLSTNSPGAGEQITVTATVTNQGNTASGS CEEEEECCCCCCCCCCCCCEEEEHHHEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCC TNLRYYSNGNRIGESPVPEMEAGKSEEISFSWTPETESTAEISAKVDEENLVEEGNEDNN CEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCC VKTAGFITFKKENLPDLIINSINHPQYPSPGKPKTIGISVINNGAASSGETKLMLYIDGR EEEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCC PAREWDIPGLSGGESAYKSYTWIPILEGSAEIKAVVDENNQVTESDEENNEKTATITVAI CCCCCCCCCCCCCCHHHHCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEE DFLPDLIIEDIVPETEGELGKPLNLILKVKNQGTFASEEAVAEYYINGTAPDQEGINIPA HHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCHHCEEEEEECCCCCCCCCCCCCC LPAGTGADVSFSLIPDREGQMEVKAFIDSGTYVYESNEDNNQFSKIVNVKTKLPDLIIES CCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHEEHHHHCCHHHHHH VSLTPEAPRIGDSVTFTVSVKNIGLSDSGSSELRYQINGANKTYSSTLSVPPVVTGETVK CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCHHHH STFSWVPEEDGNLNMELVADSGSAIREDDETNNKLTRTIAVSKQATYTNGGSSGSGSGSG HHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCCC SSSKSNSMGSGVSKEPARNVEVKELDTRNIMSGYHVKYDFAKNATCVTYVEFEPRKTFKK CCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCEEEEEECCCCEEEEEEEECCHHHHHH TTATVEVLKEKSIFVQKQPPGRIYKQLNIWLGNKGAGREDSLKNAYTGFKVEKDWIKNNS HHHHHHHHHCCCEEEEECCCHHEEEEEEEEECCCCCCCCCHHHHHHCCCEEEHHHHCCCC VEESNIALLWYDSKWKPLKTEKTGEDDDYVYFRAETIAYSCFAIGEYKGEEGTVKETTDD CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHEEEEEEEEEEEECCCCCCCCCCCC EGIQETLRSWEGGGKAILNSSAEREDDIQKKPMGVAKILLAISLPLFMILVEYFVLKKKI HHHHHHHHHCCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SVAIAADEDIPFEDDGNSTVLLPDLVIEDISLSTNSPGAGEQITVTATVTNQGNTASGS EEEEECCCCCCCCCCCCCEEEEHHHEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCC TNLRYYSNGNRIGESPVPEMEAGKSEEISFSWTPETESTAEISAKVDEENLVEEGNEDNN CEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCC VKTAGFITFKKENLPDLIINSINHPQYPSPGKPKTIGISVINNGAASSGETKLMLYIDGR EEEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCC PAREWDIPGLSGGESAYKSYTWIPILEGSAEIKAVVDENNQVTESDEENNEKTATITVAI CCCCCCCCCCCCCCHHHHCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEE DFLPDLIIEDIVPETEGELGKPLNLILKVKNQGTFASEEAVAEYYINGTAPDQEGINIPA HHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCHHCEEEEEECCCCCCCCCCCCCC LPAGTGADVSFSLIPDREGQMEVKAFIDSGTYVYESNEDNNQFSKIVNVKTKLPDLIIES CCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHEEHHHHCCHHHHHH VSLTPEAPRIGDSVTFTVSVKNIGLSDSGSSELRYQINGANKTYSSTLSVPPVVTGETVK CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCHHHH STFSWVPEEDGNLNMELVADSGSAIREDDETNNKLTRTIAVSKQATYTNGGSSGSGSGSG HHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCCC SSSKSNSMGSGVSKEPARNVEVKELDTRNIMSGYHVKYDFAKNATCVTYVEFEPRKTFKK CCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCEEEEEECCCCEEEEEEEECCHHHHHH TTATVEVLKEKSIFVQKQPPGRIYKQLNIWLGNKGAGREDSLKNAYTGFKVEKDWIKNNS HHHHHHHHHCCCEEEEECCCHHEEEEEEEEECCCCCCCCCHHHHHHCCCEEEHHHHCCCC VEESNIALLWYDSKWKPLKTEKTGEDDDYVYFRAETIAYSCFAIGEYKGEEGTVKETTDD CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHEEEEEEEEEEEECCCCCCCCCCCC EGIQETLRSWEGGGKAILNSSAEREDDIQKKPMGVAKILLAISLPLFMILVEYFVLKKKI HHHHHHHHHCCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA