| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is yccK [H]
Identifier: 21228050
GI number: 21228050
Start: 2316651
End: 2317778
Strand: Direct
Name: yccK [H]
Synonym: MM_1948
Alternate gene names: 21228050
Gene position: 2316651-2317778 (Clockwise)
Preceding gene: 21228046
Following gene: 21228052
Centisome position: 56.55
GC content: 44.59
Gene sequence:
>1128_bases ATGTTATACAGAAGACTTGGCAGGACGGACGAAAAAGTTTCCATACTGGGTTTTGGCACCATGCGTCTCCCTGTTATAGG GGGAGATGATACCCGGGTTGATGAGGAAAAATCCATAGAGATGATCCGTTATGCCATCGATTCCGGTGTTAATTACATTG ATACTGCCTATCCTTACCATGGTGGCATGAGCGAATCCGTTCTCGGGAAGGCTCTTGAAGACGGCTACCGTGATAAAGTC TATATCGCAACCAAACTCCCGAGCTGGCTGGTTGCAAGCAGAAAAGACATGGACAGGTATTTGAACGAACAGCTTGAAAG GCTTAAAACTGATTCCATTGATTTCTATCTGGCGCACGCTTTAAACAGTGACTTCTGGGATCTGGTTAAAAAGCATGGAA TTTTTGATTTCCTTGACTCTGCCCTTGAGGATGGCAGAATAAAATATACGGGATTCTCCTTCCATGACAGCCCTGAATTG TTTAAGGAAATAGTCGATTCCTACCCGTGGACTCTATGTCAGATACAGTACAACTTTATGGATGAAAATTTCCAGGCAGG AAAAGACGGTTTGATGTATGCCGCGTCAAAGGGCCTTGGTATAGTTATTATGGAGCCCATGCGAGGGGGTTACCTTGTCT CAGGGATGCCACCTGAAATTCAGGAAATCTGGGATTCTGCTGATATACAGAGAAGCCCTGTTGAATGGAGCCTTCGATAT CTGTGGGACTATCCGGAAATAGCTGTGGTACTTAGCGGGATGTCTGAGATAAAACATGTTGAAGATAACGTAAAATTCGC GTCTGGAGGTCTTCCGGACTCCCTGACTGAGAGGGAAAGAGAGCTCATTTCGCGTGTAAAAAAAATCTACATGTCAAAGA CCAGGGTTAACTGTACCGGATGCCGGTATTGTATGCCCTGCCCTTCAGGAGTGAATATCCCTGAGAATTTCAAGTACCTC AATAATGCTGAAATGTTTGATAACGCAGAAGGAGAAAAAGCTCTGTACAGCGGCCTTGAAGGACAGGCTTCAAACTGTAC GGAATGCGGACAGTGTGAAGAAAAGTGCCCTCAAAAAATTCCTGTCAGTCAGATGCTAAAAGAGGTTGTTAAATTATTTG GGAAATGA
Upstream 100 bases:
>100_bases TGTAGCTTACACAAAGCGTTATCTTCTATCATGACAAAGGGGGGTAAGGGATTCATTTCGATATGGGTTTCAAGTATTTT TCTTGAGGGGGCAAAAATAT
Downstream 100 bases:
>100_bases TCCCCTCAAAATCAAAAATGGGTCATGCAGTCGCCTTAAAAACCGGAACCACAGTATGTAAGTATTATATTGGACTGCAG GTTTTTCTCCGGGCTGTTAT
Product: aldo/keto reductase family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MLYRRLGRTDEKVSILGFGTMRLPVIGGDDTRVDEEKSIEMIRYAIDSGVNYIDTAYPYHGGMSESVLGKALEDGYRDKV YIATKLPSWLVASRKDMDRYLNEQLERLKTDSIDFYLAHALNSDFWDLVKKHGIFDFLDSALEDGRIKYTGFSFHDSPEL FKEIVDSYPWTLCQIQYNFMDENFQAGKDGLMYAASKGLGIVIMEPMRGGYLVSGMPPEIQEIWDSADIQRSPVEWSLRY LWDYPEIAVVLSGMSEIKHVEDNVKFASGGLPDSLTERERELISRVKKIYMSKTRVNCTGCRYCMPCPSGVNIPENFKYL NNAEMFDNAEGEKALYSGLEGQASNCTECGQCEEKCPQKIPVSQMLKEVVKLFGK
Sequences:
>Translated_375_residues MLYRRLGRTDEKVSILGFGTMRLPVIGGDDTRVDEEKSIEMIRYAIDSGVNYIDTAYPYHGGMSESVLGKALEDGYRDKV YIATKLPSWLVASRKDMDRYLNEQLERLKTDSIDFYLAHALNSDFWDLVKKHGIFDFLDSALEDGRIKYTGFSFHDSPEL FKEIVDSYPWTLCQIQYNFMDENFQAGKDGLMYAASKGLGIVIMEPMRGGYLVSGMPPEIQEIWDSADIQRSPVEWSLRY LWDYPEIAVVLSGMSEIKHVEDNVKFASGGLPDSLTERERELISRVKKIYMSKTRVNCTGCRYCMPCPSGVNIPENFKYL NNAEMFDNAEGEKALYSGLEGQASNCTECGQCEEKCPQKIPVSQMLKEVVKLFGK >Mature_375_residues MLYRRLGRTDEKVSILGFGTMRLPVIGGDDTRVDEEKSIEMIRYAIDSGVNYIDTAYPYHGGMSESVLGKALEDGYRDKV YIATKLPSWLVASRKDMDRYLNEQLERLKTDSIDFYLAHALNSDFWDLVKKHGIFDFLDSALEDGRIKYTGFSFHDSPEL FKEIVDSYPWTLCQIQYNFMDENFQAGKDGLMYAASKGLGIVIMEPMRGGYLVSGMPPEIQEIWDSADIQRSPVEWSLRY LWDYPEIAVVLSGMSEIKHVEDNVKFASGGLPDSLTERERELISRVKKIYMSKTRVNCTGCRYCMPCPSGVNIPENFKYL NNAEMFDNAEGEKALYSGLEGQASNCTECGQCEEKCPQKIPVSQMLKEVVKLFGK
Specific function: Unknown
COG id: COG1453
COG function: function code R; Predicted oxidoreductases of the aldo/keto reductase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Escherichia coli, GI87081735, Length=229, Percent_Identity=28.3842794759825, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI212645785, Length=306, Percent_Identity=25.8169934640523, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646159, Length=221, Percent_Identity=29.8642533936652, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24646155, Length=326, Percent_Identity=24.8466257668712, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 42689; Mature: 42689
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYRRLGRTDEKVSILGFGTMRLPVIGGDDTRVDEEKSIEMIRYAIDSGVNYIDTAYPYH CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC GGMSESVLGKALEDGYRDKVYIATKLPSWLVASRKDMDRYLNEQLERLKTDSIDFYLAHA CCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LNSDFWDLVKKHGIFDFLDSALEDGRIKYTGFSFHDSPELFKEIVDSYPWTLCQIQYNFM HCCHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCC DENFQAGKDGLMYAASKGLGIVIMEPMRGGYLVSGMPPEIQEIWDSADIQRSPVEWSLRY CCCCCCCCCCEEEEECCCCEEEEECCCCCCEEECCCCHHHHHHHCCCCCCCCCHHEEHHH LWDYPEIAVVLSGMSEIKHVEDNVKFASGGLPDSLTERERELISRVKKIYMSKTRVNCTG HCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC CRYCMPCPSGVNIPENFKYLNNAEMFDNAEGEKALYSGLEGQASNCTECGQCEEKCPQKI CCEECCCCCCCCCCCCCHHCCCCHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCC PVSQMLKEVVKLFGK CHHHHHHHHHHHHCC >Mature Secondary Structure MLYRRLGRTDEKVSILGFGTMRLPVIGGDDTRVDEEKSIEMIRYAIDSGVNYIDTAYPYH CCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC GGMSESVLGKALEDGYRDKVYIATKLPSWLVASRKDMDRYLNEQLERLKTDSIDFYLAHA CCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LNSDFWDLVKKHGIFDFLDSALEDGRIKYTGFSFHDSPELFKEIVDSYPWTLCQIQYNFM HCCHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCC DENFQAGKDGLMYAASKGLGIVIMEPMRGGYLVSGMPPEIQEIWDSADIQRSPVEWSLRY CCCCCCCCCCEEEEECCCCEEEEECCCCCCEEECCCCHHHHHHHCCCCCCCCCHHEEHHH LWDYPEIAVVLSGMSEIKHVEDNVKFASGGLPDSLTERERELISRVKKIYMSKTRVNCTG HCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC CRYCMPCPSGVNIPENFKYLNNAEMFDNAEGEKALYSGLEGQASNCTECGQCEEKCPQKI CCEECCCCCCCCCCCCCHHCCCCHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCC PVSQMLKEVVKLFGK CHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9274031; 9384377; 9106203 [H]