| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228020
Identifier: 21228020
GI number: 21228020
Start: 2281765
End: 2284464
Strand: Reverse
Name: 21228020
Synonym: MM_1918
Alternate gene names: NA
Gene position: 2284464-2281765 (Counterclockwise)
Preceding gene: 21228023
Following gene: 21228009
Centisome position: 55.77
GC content: 33.26
Gene sequence:
>2700_bases ATGCAAATTGTAGATTGTGTTTTGGAACAACATGCTAAGTCAGAGTTTGAAAAATGGGAAAATGAAATTGAAAAAGCTAC TAAAGAAAATAAAAAATTTGGAGAACTCTTAGGAAATGAAATTGGTAAAGAGAAACGTACTCGTTTTTTTGAGATATGGG GAACATTAGATCACGAGACTCAATATTCAATTCTTAGACCTCATTTATGGGATGACAAAAAACCTTCAGAAGGATATGAG AATTTAGCTAAACTCGTAAAAAAAGGTTATATTAAAAAGATTCTTTCAACAAATCTGGAGAATTTACTGGAAAAAGCCCT GAACAATGTAGGATGCTACCAACCAGATGATTTTGTTGTAGTTGTAAATGGAAAAGATCGACATGAAGAGTTAGTTGAAC AACTTAATTCCTCTCGCTCTTCATTAAAAATAACAAAATTACATGGCAGCTTAGAATCTCCAAAGAGCTATGCTTTTAAG CAAGACGAAATCTCTGATTTTGCGAAGAAAATCAAGCCAGATCTTTCTCGATTAATCAACCAAAGCCTCATTATTGTAGG ATACAGTGGGCAAGACCGAGACGTTGATCTACTTTTTGAAGATGAAGGGAAAGAAATACATTTCGTGAATCCATCAAAAC CAGAAGCTGAAAGCAGAATTTCCCAGATATTGGCAGTTCGTGGAAAGGGAAAAATAATAGACGGAAACGATGGAAAATTT GATACTTTTTTTGAGAAATTACTAAAATATGTCGAACTTGAAGAAGAAAGAAGTAATGCTTCAGATTCTGAACCCTCAAT AGAAGGGTTTTTAAGAAATATAGGTTTTGGAAAAGAATTAGAAAATCCTCGAAGTCGTTACAAAAATTTAACTTCCCTTT ACGTAAAACCAACAGAGTATAATGAAATATGTTCAAAACTCGAAAAAGATCATGTAATATTCATAATAGGAGAGCCTCAT TTAGGTAAAACATATACTGCAATCCATTTACTCTGGGAATACTACCAAAAAGGCTACGAAACTCTTCATATAAGGCACGA TAACTTAGTTACACGGTTACATGAGAATGAAGGTAACCTTACAAATCTCCTTTTATCCTTACTGTCTTCTAAAGATGGAA ATCCTGTAATTATTCACTTTGATGATCCCTTTGGTGAAACGATGGAACGTCGAACAGACGAGTTTGCCAAGGGATTAAAT GATTTTTTGTTATTATCCAAGAAATATGAGCATTTGAGAATTATAGTAACCACTAGATTGAATATATTCAGAGAAGCTCT GGCTGAACAAGATTGCCAAAATATTGAAGGACTTGAGAAAGATCTGAGAGTTCATACCTCATATAAATCGGAAGTTCTGG TTGATATTTTACATAGATATACTCAGTTTTACAAACCTCTTTGGTCAACAGACGAAAAAATAGTTAGAGAGCTGGATGAA AAACTACCAAAAATGCTTCCAGCTCCTCACAATATCGAATTCTTTGTAAGAACCTCAGAAAGGCTTACCTCCTTAGAAGA GATATTTCAACATGTGGATAAATCAAAAGAGATGATTAAAGCTCTCGGAGAATGGATGGCAAGCTTATCTGACCATGAGC AGATCTTCCTGACGTGGGTAGAAATACAATCAACCTCAAACATACTCTTTACAAATGACTCTGCATCTAAAATAAACCTT GAAGATGCTTATAGAGAAACTTTAGCTTTTTTGTATAAAAGAAGATACATATTTAGCATTCCTCCAAGTTCATTTTCAGT TGACAAAGATAAGTTTGATATGATACTTTTGGAAAGTAGAGAAAAAGATTCAGATGTAAGTAAATTTGACTTTGTACACC CTTCTTACCATGAAGCTTTTTGGTACGCCATAAAAGAGGAGTCAAGATTGCTTTATTGGTGGAGAGTATTAAAAGAAAAC TTAGCAGGGATATTGGATGACTTGGATAATAAACTGGATCGCGTCCAATTACGTATAATTGAAAATTACGGGACAGTAAA TAGAGATTTAGATAAATTATTACTTATTTCAGCAGAAAGTGAAGATGTTGACGAAAAGGTTATAGCTCTAAAGCACATGA TGGAAAGAATCGAAGTATTTGGAGAATCTTATTCATTTTCTTCTTGTATGGAAGCTGTTATTTCAGCACAAGATCCAAAA CATAGAATGGTACTCGTAAACTTACTTCCCAAAAACTTCAGCACTTTGCCTCCGGGAATTATTGATAAGTCAATGTTGCT CCTCGTTGATCCCGAAAAAGAAGTTAGGAATAGATACTGGGAGATTTACTCAGACAGAATCGAAATAATTGATAAGCTGG AAACAAATCCAGAATTTAAGCTAGGAAGGTTAGTAAAAAAAATTCAATTGATAGAATTATTAAATAGGCACCTAAATAAT AAGTCAATAGAAATAAAAGTGATAAATAGATTTCTTCAGATTACCCTACCTGAATTCAAAATAGTATTTAAGAATAATTT AGAACTTGGATACGATTTAACTCAATATGCTTATAGCAGCGGGGGAATCTTGCGTCGAAGCCTATCTAATACACAAAAGG AAAACATAAAATATATTGAAGAGTATATTATAACAAATTTGCACGATGATCGTTTCCTACAGAAAAGAAGTGCTAGATTA GTAGTAAATGCATTAGAAAGAGCGCGAATGAATAAAACTAGAGCTACAATGAAAAAATGA
Upstream 100 bases:
>100_bases TTTAGCTAGCAGCATGGTTTCAAGGAAAATCTCAGGTGCTGATCCATATATTTTGTTTCTCGGTGCCGGAGCGTCCATAA GTTCGGGATGCTCAAGTATG
Downstream 100 bases:
>100_bases AAATGGGTTTTAAAAATTACTTAGGAGTCGTCACAGAACAAACAATGCACAGGTTTCGATTGGATGTCTTGATTTTCAAG ATCATTATCACCAATTGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 899; Mature: 899
Protein sequence:
>899_residues MQIVDCVLEQHAKSEFEKWENEIEKATKENKKFGELLGNEIGKEKRTRFFEIWGTLDHETQYSILRPHLWDDKKPSEGYE NLAKLVKKGYIKKILSTNLENLLEKALNNVGCYQPDDFVVVVNGKDRHEELVEQLNSSRSSLKITKLHGSLESPKSYAFK QDEISDFAKKIKPDLSRLINQSLIIVGYSGQDRDVDLLFEDEGKEIHFVNPSKPEAESRISQILAVRGKGKIIDGNDGKF DTFFEKLLKYVELEEERSNASDSEPSIEGFLRNIGFGKELENPRSRYKNLTSLYVKPTEYNEICSKLEKDHVIFIIGEPH LGKTYTAIHLLWEYYQKGYETLHIRHDNLVTRLHENEGNLTNLLLSLLSSKDGNPVIIHFDDPFGETMERRTDEFAKGLN DFLLLSKKYEHLRIIVTTRLNIFREALAEQDCQNIEGLEKDLRVHTSYKSEVLVDILHRYTQFYKPLWSTDEKIVRELDE KLPKMLPAPHNIEFFVRTSERLTSLEEIFQHVDKSKEMIKALGEWMASLSDHEQIFLTWVEIQSTSNILFTNDSASKINL EDAYRETLAFLYKRRYIFSIPPSSFSVDKDKFDMILLESREKDSDVSKFDFVHPSYHEAFWYAIKEESRLLYWWRVLKEN LAGILDDLDNKLDRVQLRIIENYGTVNRDLDKLLLISAESEDVDEKVIALKHMMERIEVFGESYSFSSCMEAVISAQDPK HRMVLVNLLPKNFSTLPPGIIDKSMLLLVDPEKEVRNRYWEIYSDRIEIIDKLETNPEFKLGRLVKKIQLIELLNRHLNN KSIEIKVINRFLQITLPEFKIVFKNNLELGYDLTQYAYSSGGILRRSLSNTQKENIKYIEEYIITNLHDDRFLQKRSARL VVNALERARMNKTRATMKK
Sequences:
>Translated_899_residues MQIVDCVLEQHAKSEFEKWENEIEKATKENKKFGELLGNEIGKEKRTRFFEIWGTLDHETQYSILRPHLWDDKKPSEGYE NLAKLVKKGYIKKILSTNLENLLEKALNNVGCYQPDDFVVVVNGKDRHEELVEQLNSSRSSLKITKLHGSLESPKSYAFK QDEISDFAKKIKPDLSRLINQSLIIVGYSGQDRDVDLLFEDEGKEIHFVNPSKPEAESRISQILAVRGKGKIIDGNDGKF DTFFEKLLKYVELEEERSNASDSEPSIEGFLRNIGFGKELENPRSRYKNLTSLYVKPTEYNEICSKLEKDHVIFIIGEPH LGKTYTAIHLLWEYYQKGYETLHIRHDNLVTRLHENEGNLTNLLLSLLSSKDGNPVIIHFDDPFGETMERRTDEFAKGLN DFLLLSKKYEHLRIIVTTRLNIFREALAEQDCQNIEGLEKDLRVHTSYKSEVLVDILHRYTQFYKPLWSTDEKIVRELDE KLPKMLPAPHNIEFFVRTSERLTSLEEIFQHVDKSKEMIKALGEWMASLSDHEQIFLTWVEIQSTSNILFTNDSASKINL EDAYRETLAFLYKRRYIFSIPPSSFSVDKDKFDMILLESREKDSDVSKFDFVHPSYHEAFWYAIKEESRLLYWWRVLKEN LAGILDDLDNKLDRVQLRIIENYGTVNRDLDKLLLISAESEDVDEKVIALKHMMERIEVFGESYSFSSCMEAVISAQDPK HRMVLVNLLPKNFSTLPPGIIDKSMLLLVDPEKEVRNRYWEIYSDRIEIIDKLETNPEFKLGRLVKKIQLIELLNRHLNN KSIEIKVINRFLQITLPEFKIVFKNNLELGYDLTQYAYSSGGILRRSLSNTQKENIKYIEEYIITNLHDDRFLQKRSARL VVNALERARMNKTRATMKK >Mature_899_residues MQIVDCVLEQHAKSEFEKWENEIEKATKENKKFGELLGNEIGKEKRTRFFEIWGTLDHETQYSILRPHLWDDKKPSEGYE NLAKLVKKGYIKKILSTNLENLLEKALNNVGCYQPDDFVVVVNGKDRHEELVEQLNSSRSSLKITKLHGSLESPKSYAFK QDEISDFAKKIKPDLSRLINQSLIIVGYSGQDRDVDLLFEDEGKEIHFVNPSKPEAESRISQILAVRGKGKIIDGNDGKF DTFFEKLLKYVELEEERSNASDSEPSIEGFLRNIGFGKELENPRSRYKNLTSLYVKPTEYNEICSKLEKDHVIFIIGEPH LGKTYTAIHLLWEYYQKGYETLHIRHDNLVTRLHENEGNLTNLLLSLLSSKDGNPVIIHFDDPFGETMERRTDEFAKGLN DFLLLSKKYEHLRIIVTTRLNIFREALAEQDCQNIEGLEKDLRVHTSYKSEVLVDILHRYTQFYKPLWSTDEKIVRELDE KLPKMLPAPHNIEFFVRTSERLTSLEEIFQHVDKSKEMIKALGEWMASLSDHEQIFLTWVEIQSTSNILFTNDSASKINL EDAYRETLAFLYKRRYIFSIPPSSFSVDKDKFDMILLESREKDSDVSKFDFVHPSYHEAFWYAIKEESRLLYWWRVLKEN LAGILDDLDNKLDRVQLRIIENYGTVNRDLDKLLLISAESEDVDEKVIALKHMMERIEVFGESYSFSSCMEAVISAQDPK HRMVLVNLLPKNFSTLPPGIIDKSMLLLVDPEKEVRNRYWEIYSDRIEIIDKLETNPEFKLGRLVKKIQLIELLNRHLNN KSIEIKVINRFLQITLPEFKIVFKNNLELGYDLTQYAYSSGGILRRSLSNTQKENIKYIEEYIITNLHDDRFLQKRSARL VVNALERARMNKTRATMKK
Specific function: Unknown
COG id: COG5635
COG function: function code T; Predicted NTPase (NACHT family)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105188; Mature: 105188
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIVDCVLEQHAKSEFEKWENEIEKATKENKKFGELLGNEIGKEKRTRFFEIWGTLDHET CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCC QYSILRPHLWDDKKPSEGYENLAKLVKKGYIKKILSTNLENLLEKALNNVGCYQPDDFVV CHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE VVNGKDRHEELVEQLNSSRSSLKITKLHGSLESPKSYAFKQDEISDFAKKIKPDLSRLIN EECCCCHHHHHHHHHHCCHHCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC QSLIIVGYSGQDRDVDLLFEDEGKEIHFVNPSKPEAESRISQILAVRGKGKIIDGNDGKF CCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCH DTFFEKLLKYVELEEERSNASDSEPSIEGFLRNIGFGKELENPRSRYKNLTSLYVKPTEY HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHEEECCCCH NEICSKLEKDHVIFIIGEPHLGKTYTAIHLLWEYYQKGYETLHIRHDNLVTRLHENEGNL HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCHH TNLLLSLLSSKDGNPVIIHFDDPFGETMERRTDEFAKGLNDFLLLSKKYEHLRIIVTTRL HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHH NIFREALAEQDCQNIEGLEKDLRVHTSYKSEVLVDILHRYTQFYKPLWSTDEKIVRELDE HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KLPKMLPAPHNIEFFVRTSERLTSLEEIFQHVDKSKEMIKALGEWMASLSDHEQIFLTWV HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE EIQSTSNILFTNDSASKINLEDAYRETLAFLYKRRYIFSIPPSSFSVDKDKFDMILLESR EEECCCCEEEECCCCCEECHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHCEEEEECC EKDSDVSKFDFVHPSYHEAFWYAIKEESRLLYWWRVLKENLAGILDDLDNKLDRVQLRII CCCCCCCHHCCCCCCHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENYGTVNRDLDKLLLISAESEDVDEKVIALKHMMERIEVFGESYSFSSCMEAVISAQDPK HHCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC HRMVLVNLLPKNFSTLPPGIIDKSMLLLVDPEKEVRNRYWEIYSDRIEIIDKLETNPEFK CEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LGRLVKKIQLIELLNRHLNNKSIEIKVINRFLQITLPEFKIVFKNNLELGYDLTQYAYSS HHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCC GGILRRSLSNTQKENIKYIEEYIITNLHDDRFLQKRSARLVVNALERARMNKTRATMKK CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQIVDCVLEQHAKSEFEKWENEIEKATKENKKFGELLGNEIGKEKRTRFFEIWGTLDHET CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCC QYSILRPHLWDDKKPSEGYENLAKLVKKGYIKKILSTNLENLLEKALNNVGCYQPDDFVV CHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE VVNGKDRHEELVEQLNSSRSSLKITKLHGSLESPKSYAFKQDEISDFAKKIKPDLSRLIN EECCCCHHHHHHHHHHCCHHCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC QSLIIVGYSGQDRDVDLLFEDEGKEIHFVNPSKPEAESRISQILAVRGKGKIIDGNDGKF CCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCH DTFFEKLLKYVELEEERSNASDSEPSIEGFLRNIGFGKELENPRSRYKNLTSLYVKPTEY HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHEEECCCCH NEICSKLEKDHVIFIIGEPHLGKTYTAIHLLWEYYQKGYETLHIRHDNLVTRLHENEGNL HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCHH TNLLLSLLSSKDGNPVIIHFDDPFGETMERRTDEFAKGLNDFLLLSKKYEHLRIIVTTRL HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEEHHHH NIFREALAEQDCQNIEGLEKDLRVHTSYKSEVLVDILHRYTQFYKPLWSTDEKIVRELDE HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH KLPKMLPAPHNIEFFVRTSERLTSLEEIFQHVDKSKEMIKALGEWMASLSDHEQIFLTWV HHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE EIQSTSNILFTNDSASKINLEDAYRETLAFLYKRRYIFSIPPSSFSVDKDKFDMILLESR EEECCCCEEEECCCCCEECHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHCEEEEECC EKDSDVSKFDFVHPSYHEAFWYAIKEESRLLYWWRVLKENLAGILDDLDNKLDRVQLRII CCCCCCCHHCCCCCCHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENYGTVNRDLDKLLLISAESEDVDEKVIALKHMMERIEVFGESYSFSSCMEAVISAQDPK HHCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC HRMVLVNLLPKNFSTLPPGIIDKSMLLLVDPEKEVRNRYWEIYSDRIEIIDKLETNPEFK CEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LGRLVKKIQLIELLNRHLNNKSIEIKVINRFLQITLPEFKIVFKNNLELGYDLTQYAYSS HHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCC GGILRRSLSNTQKENIKYIEEYIITNLHDDRFLQKRSARLVVNALERARMNKTRATMKK CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA