| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227972
Identifier: 21227972
GI number: 21227972
Start: 2220642
End: 2222825
Strand: Direct
Name: 21227972
Synonym: MM_1870
Alternate gene names: NA
Gene position: 2220642-2222825 (Clockwise)
Preceding gene: 21227971
Following gene: 21227976
Centisome position: 54.21
GC content: 47.48
Gene sequence:
>2184_bases ATGACACCCGGTGGGGTAAGTTCAATGACATATGAAGATGCCGATATTTTCGCTTTTATTTCCAAAAAATCCAGGCCGGT TTCTGCTCCTGAAAAGGTTACTGTTTCGGAAAATGAGACACTTTCAGGCGGGAACTCAGCGTCAAAAATAAGTCCCGAAA ATGAGATCGGGGGTCGGGAAAAAGAGCTCTTTAAAGAAATCTCTGGTTCTGAAGAAAGCTCTGATCCTGCCACAAAGCCA GCTTTTGAAGAGCTCCCCGTTCCTTTACCTGAGACTGTTACGGAAACTGACATACAGAACCCTTCAGGTAGTGATTCAAA AGCATTTTCAAGCACTTTTTCAGGCGCTTCTGAACTTTCCGGGCTTTCCAGAGCTGTCCCGGCACCTGCTTCCTCTTTTT ATCCTGAAGACTCTTATCCTGCCGATTTTTCCGAAAAGGAAGAACTTCCGTTTGAAAAGTTTGAAGACTATGATTTCGGA ATTTCCGGAGCCCCTCCGTCCCTGGTTGAAGCCTTCGGAATTGTAACAACCGGTATAGAACCTCTGGAAATAACGCCTTC GGCAGCCACAATTACTGGGTATATTGCTTCTGCCCGCAGGAGTGAGATCAGGCTCGGAACATATGTTGTTGTGCCTTATG AAGATGGAGAAAAGCTCTTTGCAAGGGTAGGGAAGCTCCAGTACAGGCAGGAGTTTGCAGTGGATGATGCGACCGAAATC CATTCAAGGCGCATGTTGAATGCCCGTGCAAGCCCCATAAACGAAGCCGACTACAAGTTTCTTGCCTGCCTTGATCCTCT CTGTATCCTGTATCGAAAAAAAACAGAGGGAGCACTTACACGCAGGATGGCAGACAGAATTCCCCGTCCGAACACGCCCA TACTGCCTGTAACGGACAGGCTTGAAGTCCAGACAGGGCTGAACATCCCGGAAGAAGGTGTTTTCCTCGGGCATTTAAGT GTCGGGGGAGAGCTTGTAAAAACACATTCCGAGCCCGAAACCGTTGCTTATTATCTCAGAAACGATTATTCGATGGGCGA CCCCCTTATTTTCAGGCATATGCTTATCTGCGGGAGCACAGGGACAGGAAAGACCTTCCTATCAAAAAATATTCTGCGCC AGTTCATGACCGAAAGTAACCGTTACAGGCTGCGGAATGCTTCTGATAAAGCGAGGAAAAATCCCTGTCTCGTGATTATG GACCCTCAGGATGAGTATTCCCAGATTTTCGAGGACAACGAAACCCTGACTGATGACGACAGATTCAGGTTTGAATCCGA AAATGTCGCCTGCGGCAGGGTCCAGTCAACAAAGGCTTTTGTAGCAAAGGTTGACGGACAGAAGTATCCCGGAGATAAGT CAAGGGCAGAGCAGATTGAATTTACAATTCCTTTTTCCTTTGTGGAACATAACTCCTGGCTGATCGCAGCAACAGGAATG TCCGAACTTCAGTACATCGGGCTTGAAGTGCTCCTTGGGGACTTTTTCAAGTCAAGTGTGCCGCATACCTACCAGAACTT TATAAGCCACATTGAAAACGAAGGCACACGTTCTTATTACGTTGACAGCAACAGGATCCATGAGTCTTCTTATGATGGGA TCGTGAGGAGAGTAAGCAGCAGATTCTTCTCAAAAGTCTTTGACCGCGATGCAACCCCGATTTCCGACATTGTTGACAAA ATCTTCAAGCCGGGACAGATTTCGGTTTTCCCGACAGAATACATAAGCTCCCCGAGGATAAGGGATCTCATAGTTCTCAC AATCATGAGCATGATTGTTGACAACAAGCTCAACACCACAGGGATCGATGCCATCAAGGAAACTCCGATTATCCTGGCGC TGGACGAGGCTCACCGCTACCTTTCAAAGGCAAACGGGGAACATGCTCGCCTTATAATTTCCCGTTTTGCAGACGCAGCC CGCCAGGGAAGAAAAGAAGCTCTCGGGCTCTTTTTGATCACGCAAGACCCGCAGGACATCGATGACACTGTTATCAAGCA GATCAACACAAAGCTGATCCTTAACCTCAATAACGATGCTGCAATCTCTTCCCTGAAAGTCCCCAAGGAATACGAACGCA GGATTCCCTACCTTAAGAAAGGGCAGATGATAATCCACAGCCCGGACAACAGTGATATTGTGGAAATCCTGGGGCTTTCA AGCTGTGTTGTAAGGCACCGCTAA
Upstream 100 bases:
>100_bases CTTACCCTCACAAAGGCAGACCACCTCGCAAAAATCCGGAAAGTGGAGAGGCAGGAAATCGATAAATTCTTTGAAAGCAT GAGTCCTGATACAACTTATA
Downstream 100 bases:
>100_bases GAAAAACAGAAAATTGAAAATTAACGAACCTAATTTTGAAGAACAAGTTTCAGCGCATGCCTGCCTTATGAAGTAAGGCG TGTGTCTCTTCTTTTTTGTG
Product: hypothetical protein
Products: NA
Alternate protein names: ATPase-Like Protein; Tubulin
Number of amino acids: Translated: 727; Mature: 726
Protein sequence:
>727_residues MTPGGVSSMTYEDADIFAFISKKSRPVSAPEKVTVSENETLSGGNSASKISPENEIGGREKELFKEISGSEESSDPATKP AFEELPVPLPETVTETDIQNPSGSDSKAFSSTFSGASELSGLSRAVPAPASSFYPEDSYPADFSEKEELPFEKFEDYDFG ISGAPPSLVEAFGIVTTGIEPLEITPSAATITGYIASARRSEIRLGTYVVVPYEDGEKLFARVGKLQYRQEFAVDDATEI HSRRMLNARASPINEADYKFLACLDPLCILYRKKTEGALTRRMADRIPRPNTPILPVTDRLEVQTGLNIPEEGVFLGHLS VGGELVKTHSEPETVAYYLRNDYSMGDPLIFRHMLICGSTGTGKTFLSKNILRQFMTESNRYRLRNASDKARKNPCLVIM DPQDEYSQIFEDNETLTDDDRFRFESENVACGRVQSTKAFVAKVDGQKYPGDKSRAEQIEFTIPFSFVEHNSWLIAATGM SELQYIGLEVLLGDFFKSSVPHTYQNFISHIENEGTRSYYVDSNRIHESSYDGIVRRVSSRFFSKVFDRDATPISDIVDK IFKPGQISVFPTEYISSPRIRDLIVLTIMSMIVDNKLNTTGIDAIKETPIILALDEAHRYLSKANGEHARLIISRFADAA RQGRKEALGLFLITQDPQDIDDTVIKQINTKLILNLNNDAAISSLKVPKEYERRIPYLKKGQMIIHSPDNSDIVEILGLS SCVVRHR
Sequences:
>Translated_727_residues MTPGGVSSMTYEDADIFAFISKKSRPVSAPEKVTVSENETLSGGNSASKISPENEIGGREKELFKEISGSEESSDPATKP AFEELPVPLPETVTETDIQNPSGSDSKAFSSTFSGASELSGLSRAVPAPASSFYPEDSYPADFSEKEELPFEKFEDYDFG ISGAPPSLVEAFGIVTTGIEPLEITPSAATITGYIASARRSEIRLGTYVVVPYEDGEKLFARVGKLQYRQEFAVDDATEI HSRRMLNARASPINEADYKFLACLDPLCILYRKKTEGALTRRMADRIPRPNTPILPVTDRLEVQTGLNIPEEGVFLGHLS VGGELVKTHSEPETVAYYLRNDYSMGDPLIFRHMLICGSTGTGKTFLSKNILRQFMTESNRYRLRNASDKARKNPCLVIM DPQDEYSQIFEDNETLTDDDRFRFESENVACGRVQSTKAFVAKVDGQKYPGDKSRAEQIEFTIPFSFVEHNSWLIAATGM SELQYIGLEVLLGDFFKSSVPHTYQNFISHIENEGTRSYYVDSNRIHESSYDGIVRRVSSRFFSKVFDRDATPISDIVDK IFKPGQISVFPTEYISSPRIRDLIVLTIMSMIVDNKLNTTGIDAIKETPIILALDEAHRYLSKANGEHARLIISRFADAA RQGRKEALGLFLITQDPQDIDDTVIKQINTKLILNLNNDAAISSLKVPKEYERRIPYLKKGQMIIHSPDNSDIVEILGLS SCVVRHR >Mature_726_residues TPGGVSSMTYEDADIFAFISKKSRPVSAPEKVTVSENETLSGGNSASKISPENEIGGREKELFKEISGSEESSDPATKPA FEELPVPLPETVTETDIQNPSGSDSKAFSSTFSGASELSGLSRAVPAPASSFYPEDSYPADFSEKEELPFEKFEDYDFGI SGAPPSLVEAFGIVTTGIEPLEITPSAATITGYIASARRSEIRLGTYVVVPYEDGEKLFARVGKLQYRQEFAVDDATEIH SRRMLNARASPINEADYKFLACLDPLCILYRKKTEGALTRRMADRIPRPNTPILPVTDRLEVQTGLNIPEEGVFLGHLSV GGELVKTHSEPETVAYYLRNDYSMGDPLIFRHMLICGSTGTGKTFLSKNILRQFMTESNRYRLRNASDKARKNPCLVIMD PQDEYSQIFEDNETLTDDDRFRFESENVACGRVQSTKAFVAKVDGQKYPGDKSRAEQIEFTIPFSFVEHNSWLIAATGMS ELQYIGLEVLLGDFFKSSVPHTYQNFISHIENEGTRSYYVDSNRIHESSYDGIVRRVSSRFFSKVFDRDATPISDIVDKI FKPGQISVFPTEYISSPRIRDLIVLTIMSMIVDNKLNTTGIDAIKETPIILALDEAHRYLSKANGEHARLIISRFADAAR QGRKEALGLFLITQDPQDIDDTVIKQINTKLILNLNNDAAISSLKVPKEYERRIPYLKKGQMIIHSPDNSDIVEILGLSS CVVRHR
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81058; Mature: 80927
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPGGVSSMTYEDADIFAFISKKSRPVSAPEKVTVSENETLSGGNSASKISPENEIGGRE CCCCCCCCCEECCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHCCCHH KELFKEISGSEESSDPATKPAFEELPVPLPETVTETDIQNPSGSDSKAFSSTFSGASELS HHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHCCHHHHH GLSRAVPAPASSFYPEDSYPADFSEKEELPFEKFEDYDFGISGAPPSLVEAFGIVTTGIE HHHHCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC PLEITPSAATITGYIASARRSEIRLGTYVVVPYEDGEKLFARVGKLQYRQEFAVDDATEI CEEECCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHH HSRRMLNARASPINEADYKFLACLDPLCILYRKKTEGALTRRMADRIPRPNTPILPVTDR HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEECCCCC LEVQTGLNIPEEGVFLGHLSVGGELVKTHSEPETVAYYLRNDYSMGDPLIFRHMLICGST EEHHCCCCCCCCCEEEEEECCCCHHEECCCCCHHEEEEECCCCCCCCHHHHHHHHHCCCC GTGKTFLSKNILRQFMTESNRYRLRNASDKARKNPCLVIMDPQDEYSQIFEDNETLTDDD CCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHCCCEEEEECCCHHHHHHHCCCCCCCCCC RFRFESENVACGRVQSTKAFVAKVDGQKYPGDKSRAEQIEFTIPFSFVEHNSWLIAATGM CEEECCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECEEEEECCCEEEEECCH SELQYIGLEVLLGDFFKSSVPHTYQNFISHIENEGTRSYYVDSNRIHESSYDGIVRRVSS HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH RFFSKVFDRDATPISDIVDKIFKPGQISVFPTEYISSPRIRDLIVLTIMSMIVDNKLNTT HHHHHHHCCCCCCHHHHHHHHCCCCCEEEECHHHCCCCCHHHHHHHHHHHHHHCCCCCCC GIDAIKETPIILALDEAHRYLSKANGEHARLIISRFADAARQGRKEALGLFLITQDPQDI CCHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHEEEEEEEECCCCCH DDTVIKQINTKLILNLNNDAAISSLKVPKEYERRIPYLKKGQMIIHSPDNSDIVEILGLS HHHHHHHCCCEEEEEECCCHHHHHCCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH SCVVRHR HHHHCCC >Mature Secondary Structure TPGGVSSMTYEDADIFAFISKKSRPVSAPEKVTVSENETLSGGNSASKISPENEIGGRE CCCCCCCCEECCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHCCCHH KELFKEISGSEESSDPATKPAFEELPVPLPETVTETDIQNPSGSDSKAFSSTFSGASELS HHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHCCHHHHH GLSRAVPAPASSFYPEDSYPADFSEKEELPFEKFEDYDFGISGAPPSLVEAFGIVTTGIE HHHHCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC PLEITPSAATITGYIASARRSEIRLGTYVVVPYEDGEKLFARVGKLQYRQEFAVDDATEI CEEECCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHH HSRRMLNARASPINEADYKFLACLDPLCILYRKKTEGALTRRMADRIPRPNTPILPVTDR HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEECCCCC LEVQTGLNIPEEGVFLGHLSVGGELVKTHSEPETVAYYLRNDYSMGDPLIFRHMLICGST EEHHCCCCCCCCCEEEEEECCCCHHEECCCCCHHEEEEECCCCCCCCHHHHHHHHHCCCC GTGKTFLSKNILRQFMTESNRYRLRNASDKARKNPCLVIMDPQDEYSQIFEDNETLTDDD CCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHCCCEEEEECCCHHHHHHHCCCCCCCCCC RFRFESENVACGRVQSTKAFVAKVDGQKYPGDKSRAEQIEFTIPFSFVEHNSWLIAATGM CEEECCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECEEEEECCCEEEEECCH SELQYIGLEVLLGDFFKSSVPHTYQNFISHIENEGTRSYYVDSNRIHESSYDGIVRRVSS HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH RFFSKVFDRDATPISDIVDKIFKPGQISVFPTEYISSPRIRDLIVLTIMSMIVDNKLNTT HHHHHHHCCCCCCHHHHHHHHCCCCCEEEECHHHCCCCCHHHHHHHHHHHHHHCCCCCCC GIDAIKETPIILALDEAHRYLSKANGEHARLIISRFADAARQGRKEALGLFLITQDPQDI CCHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHEEEEEEEECCCCCH DDTVIKQINTKLILNLNNDAAISSLKVPKEYERRIPYLKKGQMIIHSPDNSDIVEILGLS HHHHHHHCCCEEEEEECCCHHHHHCCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH SCVVRHR HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA