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The map label for this gene is yliC [C]

Identifier: 21227960

GI number: 21227960

Start: 2208421

End: 2209368

Strand: Reverse

Name: yliC [C]

Synonym: MM_1858

Alternate gene names: 21227960

Gene position: 2209368-2208421 (Counterclockwise)

Preceding gene: 21227961

Following gene: 21227959

Centisome position: 53.94

GC content: 48.31

Gene sequence:

>948_bases
ATGTCAGGGATAACAGGAAAAGGGACCCGGTATCTTGCTTCACTCGCGCTCATAATCATCATCAACTTTACCCTTCCCAG
GCTCATGCCCGGGGATCCGGTGAAAAACCTCATAGGAGAAGATGTATATGTGTCCGAACAGGTGATGGAAGAGCTGAGGG
CAGAACTCGGGCTTGACAGGCCTCTTTACGAGCAGTTTGCATCCTTCGTTTCAGACATCCTGCACCTTGACCTGGGGTAT
TCTTACCACCTCCATGCTCCTGTTGCAGAGATCCTCCTTGACAGGATTGGATGGACCCTGCTGTTTGTAGGGTCGTCTGT
AATTATCGGAGCCTTTGCAGGAAGCCTGCTCGGAGCTCTTGCAGGGTGGAAGCCGGAAAAGAGAACAAGCCGTGTTACAG
GTCTTGCATTTATTGCTTTTTCCTGCACCCCTCCGTATTTTCTTGCCCTTCTTTCCCTCTATATTTTTTCTTTCAGGCTG
GGACTTTTTCCTTCAAAAGGGTTTTATGACGCCCCGGAAATAGGGAGCATACTTCATCACCTTTTCCTGCCAATCTGTGT
GATGTCTGTTTTTTCGGCATCCAGAAATTTTCTGGTCATGCGCGGAAGTGTGATCCAGGAAAAGAAAGAGCTTTACGCTC
TCTATGCCAGGGCAAAAGGCCTGAATGATACCGGCGTACTCTTCAGGCACGTATTGAAAAATTCCTCACTCCCTATCATT
ACCCTTCTCGCGCTCGACTTTGGGTTTCTATTCAGCGGAGCGCTGTTTATAGAAATAATTTTTTCGTTAAACGGCATGGG
AACCCTTATTTACGGCGCAATAATGGGAAAAGATTATCCCCTTCTCCAGGGGGCTTTTCTGGTAATCTCCCTCACAGCCC
TGCTTGCAAACATGCTTGCTGACCTGCTCTATGCTTTAATCGACCCCAGAGTCAGGAGACCTGCATGA

Upstream 100 bases:

>100_bases
AAAAAAATTCTGAAAAAGAAATCCTGGAAGTTAAAAAGGTAGAAAAAGAAGTAGAAAGTACGGCAAAATAGTGCAGGAAA
TAAAATAAGAAATAAGACCA

Downstream 100 bases:

>100_bases
GCCTGGAAGCTGCCCATAGCGAAAGCTCCTGTATAACAGAAGCCTGTACTGAAGAGCATCCTGAAAAACAGCTTGAAAAT
TCGGATTTTATTTTAAAACT

Product: peptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSGITGKGTRYLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVMEELRAELGLDRPLYEQFASFVSDILHLDLGY
SYHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGALAGWKPEKRTSRVTGLAFIAFSCTPPYFLALLSLYIFSFRL
GLFPSKGFYDAPEIGSILHHLFLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVLKNSSLPII
TLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLTALLANMLADLLYALIDPRVRRPA

Sequences:

>Translated_315_residues
MSGITGKGTRYLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVMEELRAELGLDRPLYEQFASFVSDILHLDLGY
SYHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGALAGWKPEKRTSRVTGLAFIAFSCTPPYFLALLSLYIFSFRL
GLFPSKGFYDAPEIGSILHHLFLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVLKNSSLPII
TLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLTALLANMLADLLYALIDPRVRRPA
>Mature_314_residues
SGITGKGTRYLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVMEELRAELGLDRPLYEQFASFVSDILHLDLGYS
YHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGALAGWKPEKRTSRVTGLAFIAFSCTPPYFLALLSLYIFSFRLG
LFPSKGFYDAPEIGSILHHLFLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVLKNSSLPIIT
LLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLTALLANMLADLLYALIDPRVRRPA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=307, Percent_Identity=31.5960912052117, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789965, Length=324, Percent_Identity=31.1728395061728, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1789888, Length=299, Percent_Identity=31.438127090301, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788504, Length=350, Percent_Identity=27.7142857142857, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787761, Length=322, Percent_Identity=31.9875776397516, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1787497, Length=308, Percent_Identity=29.2207792207792, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=26.4492753623188, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34665; Mature: 34533

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGITGKGTRYLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVMEELRAELGLDR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCC
PLYEQFASFVSDILHLDLGYSYHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGAL
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGWKPEKRTSRVTGLAFIAFSCTPPYFLALLSLYIFSFRLGLFPSKGFYDAPEIGSILHH
HCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LFLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVLKNSSLPII
HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHH
TLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLTALLANMLA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DLLYALIDPRVRRPA
HHHHHHHCCCCCCCC
>Mature Secondary Structure 
SGITGKGTRYLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVMEELRAELGLDR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCC
PLYEQFASFVSDILHLDLGYSYHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGAL
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGWKPEKRTSRVTGLAFIAFSCTPPYFLALLSLYIFSFRLGLFPSKGFYDAPEIGSILHH
HCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LFLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVLKNSSLPII
HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHH
TLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLTALLANMLA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
DLLYALIDPRVRRPA
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA