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The map label for this gene is hmf1 [H]

Identifier: 21227927

GI number: 21227927

Start: 2175267

End: 2175479

Strand: Reverse

Name: hmf1 [H]

Synonym: MM_1825

Alternate gene names: 21227927

Gene position: 2175479-2175267 (Counterclockwise)

Preceding gene: 21227935

Following gene: 21227920

Centisome position: 53.11

GC content: 46.01

Gene sequence:

>213_bases
ATGGCAGCAAAAGTTATACCGTTCGCACCAATCGAGCGTTTAATAAGGACAGCGGGTGCTCACAGAGTGAGCGAGAGTGC
AGGAATGGCTCTTACGGAGATTCTGGAAGAATACGGGCTTCAAATATCAAAAGAGGCTATAAAGCTTGCAGAGCATGCGG
GCAGGAAGACCGTAAAGGCTGAAGACATAAAACTAGCTAAAGAAATGCTGTAA

Upstream 100 bases:

>100_bases
AAAGGAAACTCCGATATAAGCAAAAGTATTTATAGAATCTAAATACAAAAACAGAGATTAGAAGGAATTTATATTAAATA
AAAGAAGCTTGGAGGATAAT

Downstream 100 bases:

>100_bases
ATAATTCTGCTGGATAATAAAAAGAACTGAAAAATGCTGAAAAACAGCATTTTACCTATTTTTACCTGAGACTGGTTATG
CAGTTGCGGCTTCAACCTCA

Product: DNA-binding protein

Products: NA

Alternate protein names: Archaeal histone A1 [H]

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MAAKVIPFAPIERLIRTAGAHRVSESAGMALTEILEEYGLQISKEAIKLAEHAGRKTVKAEDIKLAKEML

Sequences:

>Translated_70_residues
MAAKVIPFAPIERLIRTAGAHRVSESAGMALTEILEEYGLQISKEAIKLAEHAGRKTVKAEDIKLAKEML
>Mature_69_residues
AAKVIPFAPIERLIRTAGAHRVSESAGMALTEILEEYGLQISKEAIKLAEHAGRKTVKAEDIKLAKEML

Specific function: Binds and compact DNA (95 to 150 base pairs) to form nucleosome-like structures that contain positive DNA supercoils [H]

COG id: COG2036

COG function: function code B; Histones H3 and H4

Gene ontology:

Cell location: Cytoplasm (Potential). Chromosome (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal histone HMF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003958
- InterPro:   IPR009072 [H]

Pfam domain/function: PF00808 CBFD_NFYB_HMF [H]

EC number: NA

Molecular weight: Translated: 7645; Mature: 7514

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKVIPFAPIERLIRTAGAHRVSESAGMALTEILEEYGLQISKEAIKLAEHAGRKTVKA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCH
EDIKLAKEML
HHHHHHHHCC
>Mature Secondary Structure 
AAKVIPFAPIERLIRTAGAHRVSESAGMALTEILEEYGLQISKEAIKLAEHAGRKTVKA
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCH
EDIKLAKEML
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10329402 [H]