| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227912
Identifier: 21227912
GI number: 21227912
Start: 2159120
End: 2159845
Strand: Reverse
Name: 21227912
Synonym: MM_1810
Alternate gene names: NA
Gene position: 2159845-2159120 (Counterclockwise)
Preceding gene: 21227913
Following gene: 21227911
Centisome position: 52.73
GC content: 43.66
Gene sequence:
>726_bases ATGGATATAGAAGGAATCAGCCAGACGCTGTATAAAGAAAAAAACCAGACCTTAAAAACAATTCCGGCTGATTTTTATCG GGAAGCCGAAAAATATATCCGGGAACTCGAGAAAGAAATAAGCAAAATAAACAATCCCCGTTCTCCGGAATCAAAGATGC TCAATGACGAGCATGAAAGGGCACTTTCCGACCTTGAGACCATTTTTATGAAGAGAATAGGGAAGGTTATTACCAGGGCA ACGATCCAGTCTCACGCTGATAAACCTATCTCAAAGGATATTGAAAAGCTGCTTCCTGCGGAAAAATTGCTGTATGACCT CGTGCTTCAGGGTATCGAAGCTGCAAAAGTCGAGCTTTTAGGACCTATTCTTTATCCGGATTCAGGAAAGACTGCTAGAT GGCCCTGTGTATGGTCATCAAAACAGGCCCCTGCCCCGGACCATCCGGAAGCAAAGAAAGGAGAAGAAATAACCGCATCT GCAGAGGGAAAGGAAAACGGGATAGATACGGGCAAAAATAATATAAACGAAGAATATGTTGTTGTCCGGGTACTGAAGGA TCTACCTACCTTCACAGGTGCAGACGGCCGGAATTATACGGTCAACGCTGAAGATGTTGTTGTTTTGCCGCAACTGAATG CAACCGGGCTGATAAAACGAAATGCAGCAAAACTGATTGCTGCCGGGGATAAAAGCTCAGAAGAAAAAATTTCCGAAAAG AATTGA
Upstream 100 bases:
>100_bases TCAGTACAGTTAAAAGGCAAGGATTTAAGAATAGAGGAAGGCATACAGGAAGTTCCGGAATATGCAGCCGTATATCTGAT TTGTAGAGGTGTTGCTGAGT
Downstream 100 bases:
>100_bases AACATGCAGCTTATTTTAGCAAGAAAACAGCCGGGAACATACGCAGTAGAAAGCCTGCAAACAGCAGTTTCATGCACCAT GAGGAAGGAAGCACTTCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MDIEGISQTLYKEKNQTLKTIPADFYREAEKYIRELEKEISKINNPRSPESKMLNDEHERALSDLETIFMKRIGKVITRA TIQSHADKPISKDIEKLLPAEKLLYDLVLQGIEAAKVELLGPILYPDSGKTARWPCVWSSKQAPAPDHPEAKKGEEITAS AEGKENGIDTGKNNINEEYVVVRVLKDLPTFTGADGRNYTVNAEDVVVLPQLNATGLIKRNAAKLIAAGDKSSEEKISEK N
Sequences:
>Translated_241_residues MDIEGISQTLYKEKNQTLKTIPADFYREAEKYIRELEKEISKINNPRSPESKMLNDEHERALSDLETIFMKRIGKVITRA TIQSHADKPISKDIEKLLPAEKLLYDLVLQGIEAAKVELLGPILYPDSGKTARWPCVWSSKQAPAPDHPEAKKGEEITAS AEGKENGIDTGKNNINEEYVVVRVLKDLPTFTGADGRNYTVNAEDVVVLPQLNATGLIKRNAAKLIAAGDKSSEEKISEK N >Mature_241_residues MDIEGISQTLYKEKNQTLKTIPADFYREAEKYIRELEKEISKINNPRSPESKMLNDEHERALSDLETIFMKRIGKVITRA TIQSHADKPISKDIEKLLPAEKLLYDLVLQGIEAAKVELLGPILYPDSGKTARWPCVWSSKQAPAPDHPEAKKGEEITAS AEGKENGIDTGKNNINEEYVVVRVLKDLPTFTGADGRNYTVNAEDVVVLPQLNATGLIKRNAAKLIAAGDKSSEEKISEK N
Specific function: Unknown
COG id: COG1711
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26857; Mature: 26857
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIEGISQTLYKEKNQTLKTIPADFYREAEKYIRELEKEISKINNPRSPESKMLNDEHER CCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHH ALSDLETIFMKRIGKVITRATIQSHADKPISKDIEKLLPAEKLLYDLVLQGIEAAKVELL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH GPILYPDSGKTARWPCVWSSKQAPAPDHPEAKKGEEITASAEGKENGIDTGKNNINEEYV CCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHH VVRVLKDLPTFTGADGRNYTVNAEDVVVLPQLNATGLIKRNAAKLIAAGDKSSEEKISEK HHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHEECCCCCCHHHHCCC N C >Mature Secondary Structure MDIEGISQTLYKEKNQTLKTIPADFYREAEKYIRELEKEISKINNPRSPESKMLNDEHER CCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHH ALSDLETIFMKRIGKVITRATIQSHADKPISKDIEKLLPAEKLLYDLVLQGIEAAKVELL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH GPILYPDSGKTARWPCVWSSKQAPAPDHPEAKKGEEITASAEGKENGIDTGKNNINEEYV CCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHH VVRVLKDLPTFTGADGRNYTVNAEDVVVLPQLNATGLIKRNAAKLIAAGDKSSEEKISEK HHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHEECCCCCCHHHHCCC N C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA