Click here to switch to the map view.

The map label for this gene is rps27e

Identifier: 21227910

GI number: 21227910

Start: 2158259

End: 2158447

Strand: Reverse

Name: rps27e

Synonym: MM_1808

Alternate gene names: 21227910

Gene position: 2158447-2158259 (Counterclockwise)

Preceding gene: 21227911

Following gene: 21227909

Centisome position: 52.69

GC content: 47.62

Gene sequence:

>189_bases
ATGGTAGACTATACCCAGAGACCAAAGAGCAGGTTCCTGCGCGTAAAGTGCAATGACTGCGAAAACGAACAGATCATATT
CGGAAGCGCAAGCCGCAAGATTACCTGCGTTGTCTGTGGAAGAACCCTTGCCGAACCAACCGGTGGAAAATCTACAATTA
CCACTCACATCCTGGAAGTGCTTGAATAA

Upstream 100 bases:

>100_bases
AAAGCGCATCTGGCTCAGGTACCGCTGCACTGTATGCAAGAAAGCCCACCAGAGACCCTGCTTCAGGGCAAAGAAGTTCG
AGTTCAAGGAGTAAGATAAT

Downstream 100 bases:

>100_bases
CCGGACAGGTAAAAGCACTGCACAGGAGTACAGTTGAGAGTAATAAAAGACAAAAATTGAGAAGTGGTACGAATGGGAAA
CGATAACTGGCCTGAAGTCG

Product: 30S ribosomal protein S27e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 62; Mature: 62

Protein sequence:

>62_residues
MVDYTQRPKSRFLRVKCNDCENEQIIFGSASRKITCVVCGRTLAEPTGGKSTITTHILEVLE

Sequences:

>Translated_62_residues
MVDYTQRPKSRFLRVKCNDCENEQIIFGSASRKITCVVCGRTLAEPTGGKSTITTHILEVLE
>Mature_62_residues
MVDYTQRPKSRFLRVKCNDCENEQIIFGSASRKITCVVCGRTLAEPTGGKSTITTHILEVLE

Specific function: Unknown

COG id: COG2051

COG function: function code J; Ribosomal protein S27E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S27e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS27_METAC (P61931)

Other databases:

- EMBL:   AE010299
- RefSeq:   NP_615607.1
- ProteinModelPortal:   P61931
- SMR:   P61931
- GeneID:   1472537
- GenomeReviews:   AE010299_GR
- KEGG:   mac:MA0645
- HOGENOM:   HBG392194
- OMA:   CIDCGNE
- ProtClustDB:   PRK00415
- BioCyc:   MACE188937:MA0645-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00371
- InterPro:   IPR000592
- InterPro:   IPR022959
- InterPro:   IPR011332
- PANTHER:   PTHR11594

Pfam domain/function: PF01667 Ribosomal_S27e; SSF57829 Ribosomal_zn-bd

EC number: NA

Molecular weight: Translated: 6945; Mature: 6945

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS01168 RIBOSOMAL_S27E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
6.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDYTQRPKSRFLRVKCNDCENEQIIFGSASRKITCVVCGRTLAEPTGGKSTITTHILEV
CCCCCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
LE
CC
>Mature Secondary Structure
MVDYTQRPKSRFLRVKCNDCENEQIIFGSASRKITCVVCGRTLAEPTGGKSTITTHILEV
CCCCCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHH
LE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238