| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21227905
Identifier: 21227905
GI number: 21227905
Start: 2152397
End: 2153221
Strand: Reverse
Name: 21227905
Synonym: MM_1803
Alternate gene names: NA
Gene position: 2153221-2152397 (Counterclockwise)
Preceding gene: 21227906
Following gene: 21227898
Centisome position: 52.56
GC content: 45.58
Gene sequence:
>825_bases TTGAGGCGGGAAAAAGAAAAAATAGCAGTCCTTGTCAGAGCTGTCCCGGAAAAAGGAAAAAGGAACGGGGAAGGGCACGC TGTTGGAGTCACCGGAATCAATGAAGACGGAGAGCTCCTCAGGCTTTACCCCTTCAGGTTCAGGTACGGCGAAGGGCTGG TGGATTTCAAAAAGAATGACCTGCTTGAGGTTACGGTCACCAGGCCTGAGAACGGCACGAGGTGGGAGAGCAGGAAAGTC CTTGATTACGTTAACCTTGGGAAGCCTGCAAAGGACAGGGAGATAAAAGAGCTCATTCTGCCGCTTGTGACTTCACTGGA AAAGCTGAATGTAGAAAGGGCAAGTCTTGGAGTGGTAAAACCTGAGCTTCTGGACATCGAGGTTAAGATAAACAGCCTTG AAATCTTTGATCGGCAGCAGTATTTTGACATGATGGGAGATTTTCTGGAAAAAGGGGAAAAAGCCGGGATGCCTGTCGAA ATAAAGTATATTTTCAGGTGCGAGGGAGAGGAAGCCTGCAGAGGGCATAAAATTGTTCTGCTTGACTGGGAACTCAATGA AGCCGTGAGGAATATTGTAAGGGGAGAAAAAGAATCCCTGGCTGTGAAAAGAAAAATAAGAGAACAGCTCTTTGACCATT TAAAAGGAAAAGAGCTTTACTTCATCATGGGAACCCATTTCATATACGGGACGTGGTTGATTACAGGGGTATTCTGCCCT GAAAAAGAAAGCGTAAATCAGAGAAGCATCTTTGATTTCAGGCAGAAAAGAACTGTCACTGAAATGAATAAAGGGCAGCA GGAACAGCCAGCATTAAACAGATAA
Upstream 100 bases:
>100_bases TTACTTTCAGACAGCTCCCCCAACAGTTATTACCTTCTAAGTACAATTTTCTCCTGAGATACTTATTTTCTATATTCATT TAAACGACCGAGGTTCTCCT
Downstream 100 bases:
>100_bases AGCCACTCGAATTATCGCTGAACTGACCAGAAAAACATTAAAAAACAGTTAGAAAAAACAATTCGAGAAGAGCACTAAAA AAACAATTAGAAAAAAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MRREKEKIAVLVRAVPEKGKRNGEGHAVGVTGINEDGELLRLYPFRFRYGEGLVDFKKNDLLEVTVTRPENGTRWESRKV LDYVNLGKPAKDREIKELILPLVTSLEKLNVERASLGVVKPELLDIEVKINSLEIFDRQQYFDMMGDFLEKGEKAGMPVE IKYIFRCEGEEACRGHKIVLLDWELNEAVRNIVRGEKESLAVKRKIREQLFDHLKGKELYFIMGTHFIYGTWLITGVFCP EKESVNQRSIFDFRQKRTVTEMNKGQQEQPALNR
Sequences:
>Translated_274_residues MRREKEKIAVLVRAVPEKGKRNGEGHAVGVTGINEDGELLRLYPFRFRYGEGLVDFKKNDLLEVTVTRPENGTRWESRKV LDYVNLGKPAKDREIKELILPLVTSLEKLNVERASLGVVKPELLDIEVKINSLEIFDRQQYFDMMGDFLEKGEKAGMPVE IKYIFRCEGEEACRGHKIVLLDWELNEAVRNIVRGEKESLAVKRKIREQLFDHLKGKELYFIMGTHFIYGTWLITGVFCP EKESVNQRSIFDFRQKRTVTEMNKGQQEQPALNR >Mature_274_residues MRREKEKIAVLVRAVPEKGKRNGEGHAVGVTGINEDGELLRLYPFRFRYGEGLVDFKKNDLLEVTVTRPENGTRWESRKV LDYVNLGKPAKDREIKELILPLVTSLEKLNVERASLGVVKPELLDIEVKINSLEIFDRQQYFDMMGDFLEKGEKAGMPVE IKYIFRCEGEEACRGHKIVLLDWELNEAVRNIVRGEKESLAVKRKIREQLFDHLKGKELYFIMGTHFIYGTWLITGVFCP EKESVNQRSIFDFRQKRTVTEMNKGQQEQPALNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31830; Mature: 31830
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRREKEKIAVLVRAVPEKGKRNGEGHAVGVTGINEDGELLRLYPFRFRYGEGLVDFKKND CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEECCCC LLEVTVTRPENGTRWESRKVLDYVNLGKPAKDREIKELILPLVTSLEKLNVERASLGVVK EEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCC PELLDIEVKINSLEIFDRQQYFDMMGDFLEKGEKAGMPVEIKYIFRCEGEEACRGHKIVL CEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEEECCCHHHCCCEEEE LDWELNEAVRNIVRGEKESLAVKRKIREQLFDHLKGKELYFIMGTHFIYGTWLITGVFCP EECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHEEECC EKESVNQRSIFDFRQKRTVTEMNKGQQEQPALNR CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MRREKEKIAVLVRAVPEKGKRNGEGHAVGVTGINEDGELLRLYPFRFRYGEGLVDFKKND CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEECCCC LLEVTVTRPENGTRWESRKVLDYVNLGKPAKDREIKELILPLVTSLEKLNVERASLGVVK EEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCC PELLDIEVKINSLEIFDRQQYFDMMGDFLEKGEKAGMPVEIKYIFRCEGEEACRGHKIVL CEEEEEEEEEEEEEEHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEEECCCHHHCCCEEEE LDWELNEAVRNIVRGEKESLAVKRKIREQLFDHLKGKELYFIMGTHFIYGTWLITGVFCP EECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHEEECC EKESVNQRSIFDFRQKRTVTEMNKGQQEQPALNR CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA