Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21227898

Identifier: 21227898

GI number: 21227898

Start: 2145308

End: 2145715

Strand: Reverse

Name: 21227898

Synonym: MM_1796

Alternate gene names: NA

Gene position: 2145715-2145308 (Counterclockwise)

Preceding gene: 21227905

Following gene: 21227897

Centisome position: 52.38

GC content: 43.38

Gene sequence:

>408_bases
ATGGTTCAGCAAATTATCCTCAGAAACCTTGAAAAACCCAGGATTAAAAGCCTTGAGGAAGACCTTATATGGTTCTGTGA
CAGCTTTGGCTTTTCTTCTGGGAGGGACACGGAAAATACAGCTAACAGGATAATTTTCAGCTTGCTTGAAAAGCTTTCAA
ATGACAGGGAAAGCTCATCCGAAGACCTGGCTGAAGATCTGGATATGAAAATTTCAAGAATCAACCACCATCTCCGAAAC
CTCAATGAGTCAGGGCTACTGTACAGGAAAAAACGCCTGATTTATCTTAGGGGGGGAAGCCTTAAAGCTGCAGTAAAGGA
GATGAGAAAGGACTCGGAAAGGATACTGGATGAGCTGGAAAGCGTAGCTGAAGAGATCGACCTGATGATGGGCCTTAAAA
ACAGGTAA

Upstream 100 bases:

>100_bases
AAAATGAATCAATAAAATAGCCATAATTGAAGTAAAATCGATATGATATCCACAAATCTAAATAAAATTTATATATTTGA
ATCTCTAAAATGATACACAG

Downstream 100 bases:

>100_bases
AAATATATTGATGAGTTTTAAAAAAGGGAAAGCGGTTAAAAATAACATATGGATAAAAACTGACACCGCGAATGAAACCG
GAAAAGAATTAATAATTACC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MVQQIILRNLEKPRIKSLEEDLIWFCDSFGFSSGRDTENTANRIIFSLLEKLSNDRESSSEDLAEDLDMKISRINHHLRN
LNESGLLYRKKRLIYLRGGSLKAAVKEMRKDSERILDELESVAEEIDLMMGLKNR

Sequences:

>Translated_135_residues
MVQQIILRNLEKPRIKSLEEDLIWFCDSFGFSSGRDTENTANRIIFSLLEKLSNDRESSSEDLAEDLDMKISRINHHLRN
LNESGLLYRKKRLIYLRGGSLKAAVKEMRKDSERILDELESVAEEIDLMMGLKNR
>Mature_135_residues
MVQQIILRNLEKPRIKSLEEDLIWFCDSFGFSSGRDTENTANRIIFSLLEKLSNDRESSSEDLAEDLDMKISRINHHLRN
LNESGLLYRKKRLIYLRGGSLKAAVKEMRKDSERILDELESVAEEIDLMMGLKNR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15743; Mature: 15743

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQQIILRNLEKPRIKSLEEDLIWFCDSFGFSSGRDTENTANRIIFSLLEKLSNDRESSS
CHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
EDLAEDLDMKISRINHHLRNLNESGLLYRKKRLIYLRGGSLKAAVKEMRKDSERILDELE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHH
SVAEEIDLMMGLKNR
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MVQQIILRNLEKPRIKSLEEDLIWFCDSFGFSSGRDTENTANRIIFSLLEKLSNDRESSS
CHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
EDLAEDLDMKISRINHHLRNLNESGLLYRKKRLIYLRGGSLKAAVKEMRKDSERILDELE
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHH
SVAEEIDLMMGLKNR
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA