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The map label for this gene is rpl18e [H]

Identifier: 21227857

GI number: 21227857

Start: 2098200

End: 2098580

Strand: Direct

Name: rpl18e [H]

Synonym: MM_1755

Alternate gene names: 21227857

Gene position: 2098200-2098580 (Clockwise)

Preceding gene: 21227856

Following gene: 161485672

Centisome position: 51.22

GC content: 46.72

Gene sequence:

>381_bases
TTGGGTAAAAAATCACTGGTAAAACTAACAAGAAAAACGAATCCAAGAATCGTTTCCCTGATTCTTACCCTGAAAGATAG
GGCAAATGTAGATTCTGCCCCGATCTGGAAGGATATTGCGAAACGTCTTGAGGCGCCGTCCAGAAACTATGCGGCTGTGA
ATATAAGCAAGATCAACAGGCACACTGCTGAGAATGATGTCCTGCTTGTCCCTGGTAAGGTTCTGGGTGCAGGTCTTCTT
GATCATCCTGTTACCGTTGCGGCTGTAACATTCAGCGAATCTGCTGTTGAAAAGATCACTGAAGCCGGCGGCAAGTGCCT
GAGTGTTGAAGAGATCATGGAAGCAAATCCAAAAGGGTCCGGTATCCGGATATTCCGCTGA

Upstream 100 bases:

>100_bases
GCCTCAGGCTTCTGAGCTGCGGCAGTCATGCGATGTTCGAACGCGATAGGGATTTTTTCCGCGTGAGTGAGATTCAATAA
ATCTTGCGGAGGAACATACA

Downstream 100 bases:

>100_bases
GGTGACGAAGATGACGGTTATCGATGCAAAAGGGCTTATTCTGGGGCGTCTTGCAAGTTCAGTTGCAAAACAGTTGCTTT
CAGGAGACGAAAAGGTTTAT

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MGKKSLVKLTRKTNPRIVSLILTLKDRANVDSAPIWKDIAKRLEAPSRNYAAVNISKINRHTAENDVLLVPGKVLGAGLL
DHPVTVAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGSGIRIFR

Sequences:

>Translated_126_residues
MGKKSLVKLTRKTNPRIVSLILTLKDRANVDSAPIWKDIAKRLEAPSRNYAAVNISKINRHTAENDVLLVPGKVLGAGLL
DHPVTVAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGSGIRIFR
>Mature_125_residues
GKKSLVKLTRKTNPRIVSLILTLKDRANVDSAPIWKDIAKRLEAPSRNYAAVNISKINRHTAENDVLLVPGKVLGAGLLD
HPVTVAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGSGIRIFR

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001196
- InterPro:   IPR021131
- InterPro:   IPR022947
- InterPro:   IPR021132 [H]

Pfam domain/function: PF00828 Ribosomal_L18e [H]

EC number: NA

Molecular weight: Translated: 13630; Mature: 13499

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKKSLVKLTRKTNPRIVSLILTLKDRANVDSAPIWKDIAKRLEAPSRNYAAVNISKINR
CCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCC
HTAENDVLLVPGKVLGAGLLDHPVTVAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGS
CCCCCCEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHHHHCCCCEECHHHHHHCCCCCC
GIRIFR
CEEEEC
>Mature Secondary Structure 
GKKSLVKLTRKTNPRIVSLILTLKDRANVDSAPIWKDIAKRLEAPSRNYAAVNISKINR
CCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHCCC
HTAENDVLLVPGKVLGAGLLDHPVTVAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGS
CCCCCCEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHHHHCCCCEECHHHHHHCCCCCC
GIRIFR
CEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]