| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227757
Identifier: 21227757
GI number: 21227757
Start: 1976155
End: 1978077
Strand: Reverse
Name: 21227757
Synonym: MM_1655
Alternate gene names: NA
Gene position: 1978077-1976155 (Counterclockwise)
Preceding gene: 21227758
Following gene: 21227756
Centisome position: 48.29
GC content: 44.41
Gene sequence:
>1923_bases ATGCCACCAGAAAATAAAAATTCCGATCCCTTTGAGGAATTAAAGTGGAGTGACCTGCAGGACTGGGCAGGAGGGAAGGC AACTGCAAAGGGGATAAAGTACCAGGAAGAAGAGAGGGTTAAAGAGATAAAGCGAACCCCTGAAGGCAGCCTTGTAGCCC TGGTAGAAGGGACATCTGATTATTTTACGGAAATTTTCCTGAAAGACGGGAAATTGAGTTCGGTCTGTACCTGTCCTGTG GGGCACGACTGCAAACATGGGGTTGCAGCGGTACTTGAATACCTTGAACTTGCAGAGCAGGGAGAAGAGGTTCTGATTGC TTCCGAAGAAGACCCTTTCGTTGCAAGAGCCAGACAGGAATATACCGGAGATGAAATCTCTGCCCTCGGAGAAGAAGAGT CATCAGCCAGGGCTCTCCGTGAGTACCTGCAGCGTCTGACCAGGACGGAATTGATCGAAATACTGGTGACATTTGCAGAA AAGGATACCGGGCTTGGAAAGTATCTCAAAGAAAGGCAAACTCTCTCAGCAGAAAACGTGGAAGAAATTGTAGGGGAAGT CTACTCCGAACTTGACGAGCTTCTGGAAGAAGCCGGAGATTTTGAGTATGCGGATTATGAAATGGATGTCCCTGATTTTT TAGACGTGCAGGTAGGGCTGGAAAGCCTGCTCGATTCGGGACACCCTGATGAACTTCTTGATATCGGAAAAGAGCTGATG GACAGATACGAAAAAATTGCGGATTATGATGAAGAAGGGGAGATAGGAACAAAAATATCATTTTGCATGGACGTGGTTTT TAAAGCTCTGACCCGTTCTTCAATTCCTGCTCACGAAAAAATGCTTTATATGCTTGAAATTGAACTCAGAGACAATTACA ATATTCTTAATGAACACGGTTTCTGGGAAAAAGACTTTACTCCCGAAGAATGGAGGCGTTTTTCAGAATCCCTTAAGATC AAGCTAAAAGAAGCTGAAAAGACAGAAAATCCCCTTTATGACTCCCTCTGGCAGAGAGACTATGCTGTTGACAGGCTGGT TTATGCTCTTGAAAAATCCGGGCTCTTTGAGGAGGTAATCCCGTTATGTGAAAAAGAAGCCAAAAAAACAGGAAATTACA TCCGGCTGGTAAGGGTGCTGCTTGACTCAGGGAAGAGAGAGAAAGCAGAAGAATGGATCTACAGGGGGATTAAAGAGACC AGAGAACATGAAACTGAGACTGCCCATCAGCTCTTGCAGATCCTTCTTGAGATTAAAGAAGGGGAAGGAGACTGGCTTTT TGTGTCTGCCCTTGAAACAGAAGAGTTTTTCAGGCATCCAGACATATCCAGCTATTCTAGCATGCAGGAAGGAGCAAAGA AGGCGGGAAAATGGGAAGAAGTCCGGGAGGCTGCCATCAGGTACCTGAAAAATGGAAAACTCCCAGCCAGTAAGGGTAAA AATAAAGAAAAAGCTTCGATCCTTCCCGGGGTTCTACCGAAAACAGGGCTTCTGGAGAAGGAGTTATTAAAAAAGATCAA AACTCCTGTATTTGACCTGCTGATAAAGATAGCAATTCAGGAAGAGGACCCACAGGAAGTTATCCACTGGTATGAGGAGC TTAAAAAAAGCGGAGAAGAATCCCAGGGATACTGGCATTCAATCTCCGAAAGCGAAATTGCAAATTCGGTGAAGGAAAAG TATCCTGAAGTTGCGCTTGAAATATGGAAAAGCCTTGCAGAAAAGCTGATTTCGGAAGCAAAAGTGGGCTCGTATGAAGA GGCGTCCGCATACATTAGAAAAATAAAAGAAACATTCGAAGCCAGCGGAAAAAAAGAAGAATGGGAGAATTATCTCTCTG AGATAAAGGAGGCAAACAGCCGTAAAAAGAAGCTTCTTGGGATTCTGGATACACTTGGAGAAGACAGGATCATAAAGGTA TAA
Upstream 100 bases:
>100_bases TTCGGAAAAGAAAATCAGGGGACAGGACAAAAATAATATTCATACATAAGAAACAATTCGTAATTCCTATTTTTATATGA ATATGCCGAAATAATAGTTT
Downstream 100 bases:
>100_bases ATAATAAGAGGAGAAGCATCAGCATCTCCTCTTTAAAGTCAGGAATACACAGGTAAGCAGCACCATAAACAGGTAAGCAG CACCAATGAAAATCTAAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Zinc Finger SWIM Domain Protein
Number of amino acids: Translated: 640; Mature: 639
Protein sequence:
>640_residues MPPENKNSDPFEELKWSDLQDWAGGKATAKGIKYQEEERVKEIKRTPEGSLVALVEGTSDYFTEIFLKDGKLSSVCTCPV GHDCKHGVAAVLEYLELAEQGEEVLIASEEDPFVARARQEYTGDEISALGEEESSARALREYLQRLTRTELIEILVTFAE KDTGLGKYLKERQTLSAENVEEIVGEVYSELDELLEEAGDFEYADYEMDVPDFLDVQVGLESLLDSGHPDELLDIGKELM DRYEKIADYDEEGEIGTKISFCMDVVFKALTRSSIPAHEKMLYMLEIELRDNYNILNEHGFWEKDFTPEEWRRFSESLKI KLKEAEKTENPLYDSLWQRDYAVDRLVYALEKSGLFEEVIPLCEKEAKKTGNYIRLVRVLLDSGKREKAEEWIYRGIKET REHETETAHQLLQILLEIKEGEGDWLFVSALETEEFFRHPDISSYSSMQEGAKKAGKWEEVREAAIRYLKNGKLPASKGK NKEKASILPGVLPKTGLLEKELLKKIKTPVFDLLIKIAIQEEDPQEVIHWYEELKKSGEESQGYWHSISESEIANSVKEK YPEVALEIWKSLAEKLISEAKVGSYEEASAYIRKIKETFEASGKKEEWENYLSEIKEANSRKKKLLGILDTLGEDRIIKV
Sequences:
>Translated_640_residues MPPENKNSDPFEELKWSDLQDWAGGKATAKGIKYQEEERVKEIKRTPEGSLVALVEGTSDYFTEIFLKDGKLSSVCTCPV GHDCKHGVAAVLEYLELAEQGEEVLIASEEDPFVARARQEYTGDEISALGEEESSARALREYLQRLTRTELIEILVTFAE KDTGLGKYLKERQTLSAENVEEIVGEVYSELDELLEEAGDFEYADYEMDVPDFLDVQVGLESLLDSGHPDELLDIGKELM DRYEKIADYDEEGEIGTKISFCMDVVFKALTRSSIPAHEKMLYMLEIELRDNYNILNEHGFWEKDFTPEEWRRFSESLKI KLKEAEKTENPLYDSLWQRDYAVDRLVYALEKSGLFEEVIPLCEKEAKKTGNYIRLVRVLLDSGKREKAEEWIYRGIKET REHETETAHQLLQILLEIKEGEGDWLFVSALETEEFFRHPDISSYSSMQEGAKKAGKWEEVREAAIRYLKNGKLPASKGK NKEKASILPGVLPKTGLLEKELLKKIKTPVFDLLIKIAIQEEDPQEVIHWYEELKKSGEESQGYWHSISESEIANSVKEK YPEVALEIWKSLAEKLISEAKVGSYEEASAYIRKIKETFEASGKKEEWENYLSEIKEANSRKKKLLGILDTLGEDRIIKV >Mature_639_residues PPENKNSDPFEELKWSDLQDWAGGKATAKGIKYQEEERVKEIKRTPEGSLVALVEGTSDYFTEIFLKDGKLSSVCTCPVG HDCKHGVAAVLEYLELAEQGEEVLIASEEDPFVARARQEYTGDEISALGEEESSARALREYLQRLTRTELIEILVTFAEK DTGLGKYLKERQTLSAENVEEIVGEVYSELDELLEEAGDFEYADYEMDVPDFLDVQVGLESLLDSGHPDELLDIGKELMD RYEKIADYDEEGEIGTKISFCMDVVFKALTRSSIPAHEKMLYMLEIELRDNYNILNEHGFWEKDFTPEEWRRFSESLKIK LKEAEKTENPLYDSLWQRDYAVDRLVYALEKSGLFEEVIPLCEKEAKKTGNYIRLVRVLLDSGKREKAEEWIYRGIKETR EHETETAHQLLQILLEIKEGEGDWLFVSALETEEFFRHPDISSYSSMQEGAKKAGKWEEVREAAIRYLKNGKLPASKGKN KEKASILPGVLPKTGLLEKELLKKIKTPVFDLLIKIAIQEEDPQEVIHWYEELKKSGEESQGYWHSISESEIANSVKEKY PEVALEIWKSLAEKLISEAKVGSYEEASAYIRKIKETFEASGKKEEWENYLSEIKEANSRKKKLLGILDTLGEDRIIKV
Specific function: Unknown
COG id: COG4715
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73492; Mature: 73360
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: PS50966 ZF_SWIM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPENKNSDPFEELKWSDLQDWAGGKATAKGIKYQEEERVKEIKRTPEGSLVALVEGTSD CCCCCCCCCCHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCHH YFTEIFLKDGKLSSVCTCPVGHDCKHGVAAVLEYLELAEQGEEVLIASEEDPFVARARQE HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH YTGDEISALGEEESSARALREYLQRLTRTELIEILVTFAEKDTGLGKYLKERQTLSAENV HCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH EEIVGEVYSELDELLEEAGDFEYADYEMDVPDFLDVQVGLESLLDSGHPDELLDIGKELM HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH DRYEKIADYDEEGEIGTKISFCMDVVFKALTRSSIPAHEKMLYMLEIELRDNYNILNEHG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHEEEEEEEEECCCCCCCCCCC FWEKDFTPEEWRRFSESLKIKLKEAEKTENPLYDSLWQRDYAVDRLVYALEKSGLFEEVI CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH PLCEKEAKKTGNYIRLVRVLLDSGKREKAEEWIYRGIKETREHETETAHQLLQILLEIKE HHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GEGDWLFVSALETEEFFRHPDISSYSSMQEGAKKAGKWEEVREAAIRYLKNGKLPASKGK CCCCEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC NKEKASILPGVLPKTGLLEKELLKKIKTPVFDLLIKIAIQEEDPQEVIHWYEELKKSGEE CCCHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC SQGYWHSISESEIANSVKEKYPEVALEIWKSLAEKLISEAKVGSYEEASAYIRKIKETFE CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ASGKKEEWENYLSEIKEANSRKKKLLGILDTLGEDRIIKV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC >Mature Secondary Structure PPENKNSDPFEELKWSDLQDWAGGKATAKGIKYQEEERVKEIKRTPEGSLVALVEGTSD CCCCCCCCCHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCHH YFTEIFLKDGKLSSVCTCPVGHDCKHGVAAVLEYLELAEQGEEVLIASEEDPFVARARQE HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH YTGDEISALGEEESSARALREYLQRLTRTELIEILVTFAEKDTGLGKYLKERQTLSAENV HCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH EEIVGEVYSELDELLEEAGDFEYADYEMDVPDFLDVQVGLESLLDSGHPDELLDIGKELM HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH DRYEKIADYDEEGEIGTKISFCMDVVFKALTRSSIPAHEKMLYMLEIELRDNYNILNEHG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHEEEEEEEEECCCCCCCCCCC FWEKDFTPEEWRRFSESLKIKLKEAEKTENPLYDSLWQRDYAVDRLVYALEKSGLFEEVI CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH PLCEKEAKKTGNYIRLVRVLLDSGKREKAEEWIYRGIKETREHETETAHQLLQILLEIKE HHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GEGDWLFVSALETEEFFRHPDISSYSSMQEGAKKAGKWEEVREAAIRYLKNGKLPASKGK CCCCEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC NKEKASILPGVLPKTGLLEKELLKKIKTPVFDLLIKIAIQEEDPQEVIHWYEELKKSGEE CCCHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC SQGYWHSISESEIANSVKEKYPEVALEIWKSLAEKLISEAKVGSYEEASAYIRKIKETFE CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ASGKKEEWENYLSEIKEANSRKKKLLGILDTLGEDRIIKV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA