Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is 21227731

Identifier: 21227731

GI number: 21227731

Start: 1942010

End: 1944073

Strand: Direct

Name: 21227731

Synonym: MM_1629

Alternate gene names: NA

Gene position: 1942010-1944073 (Clockwise)

Preceding gene: 21227728

Following gene: 21227732

Centisome position: 47.41

GC content: 42.83

Gene sequence:

>2064_bases
TTGATAACAGGCATTTCCCTGGCTGGTTCGAATGATCTTTTTGGCCTATCCACAGTAAATAATACGGAAGGTTATTCCCA
GAAGATCATAATTACTGAAAATTCCGGAAAAGATCTAACAAGTTATCAGGTTCCTATTTTCCTGAATTCTTCTAACTTCA
ATTTCTCACAGGCAAAACCGGATGGTTCTGACCTGCGTTTTTCTTCCAGAGGAAAATCACTCAATTACTGGATCGAATCC
TGGGACCCGGAAGCCGAAAAAGCTCTTGTCTGGGTTAAAATACCTTCTCTACCTGCGAACAGGGATACAGCACTCCTTCT
GGAATGCGGAAATCCTGACGCTGAGGCAGTGAGTGATGGAGGCAGGACCTTTGAATTCTTTGACGGCTTTGAGGGGGAAA
AGCTCAAAGGTCTTGTATGGGACTCCAAAAAATCAGGTGGAGGATTTGTTGAAGTCGGTAACGGCACATGTAAAGTAACA
GTTCCCAAGCCTCACGCTTATGATACTTCTCTTATCTATTCCAAAAAAAGTTTTGATATTAATTCCATGTTTGTCGTCAA
AAGAATGAAAGTTACCACAGGAAAAGATGAAAGAGGCCCTCTCCTGAAGCAGGGTTTCATAGACCAGATAAGCAGCAGAA
AAAATGAAATCACGCATAAGACCGAATTTGCCGGTGAAAGCCGGGTGGGCTGGGAGACAGCTTACAGAAAAGAGAGGTAC
AATTCCTTTGACAAAACTGACGTCCGTGTCTCTGAAGGACAGTGGTACACCTCGGGAATTGCCTGGTACGAAGAAAACGA
CACGCGCAGTGTAGCCTGGTATAATAATGGAATCCGCGATTCAAAGATGGATTATTCTTCCAGTGATTACATTACAAACT
TCCCTATGCGCGTTTATCTTTATGCCGAATCTTATTCCGATGCCTCGAAGAACACAGGATATATGGCTGTAGACTACGCT
TTTGTCCGCAAATTTGTTGAATCCGAGCCAGCTGTCAGTTTCGCCTCAGGTCAGATAGAAACTGAAAGCTCTGACAAAGA
TAATACTTCTGAAACTGATAATGTTTCCGAATCCGAAAACACATCTTCGGAATCAGGCATTACTCCTGAAAATGAAACTG
TTTTACCTGAGGTTTCAGATACTGAAGAAGCCCAGGAAAAAGCAGTAAAGGTTCAGGAAAGCCGGAGCGGAAATAATACT
GAAACCCTGGAAACTCGTTTCCCGAAATACAATGTTAATGTTTCAGGAATCAAACTTTCTTCCCCATACAGTGTTGATTT
CCACGCACTTGTAAAAGAACTTGAAGCTTCGGGAATTGATACTATTTTCCTGAGTATGAACGGTCCTGATGTCTGGCAGT
ATGAGCGTTTTGTAAAAATGGCTCATGAGGAAGGAATATCTGTGCACGCAGTTCTCCTTGAAGAGCTCAACTGTACATCA
GAAACAGCTCCGAGCATTTCCCGTGCTTCTCTTAATGCGATTCTCGATTATAATGAGAAGTCACTTGCGCCTTTCGACGG
CATCAATATCTGCGTGAAAACTTCTCCTTATTCAGGTTCCGAAAACAGCTGTATGGACTATAAGCCTATTTTTGATCTTG
CCCATGAAAAAGCCGGAGAAAACGTATCCGTATCAGCAAGCCTGCCACCCGGTCATACTGCATCTGAGGTTGAGACTATT
TCTCCTCTGGTAGACTTCTTCATTGTCAGGGCTTACGACCGTGGAAATAAAGACCTTACCTCCATGTCGGATATTGTGGA
TAATATTGCACCCGATATGGGAGAGGTAAGAGGTGCGAATTCAAAAGGAATAATCGAGATTTCCGTAGAAGAAGGATTTG
CAGACAGGCTCGAAATACAGAACCTTTTTACCAGTTTTGTGAAATATTATGGAGAAGATCCGGCTTTTACAGGGGTTTCG
ATTTCCAACTATGTTACATATACAGACCTGCCTGTAGATGCTGAATCTGAAGAAAATAAGCTGTCACTGCCCGGGTTCGG
AGCTATTTCCGTACTCTTAACAGGGTTAGCAGCTTTTGCTTTTCTTAGAGCTAAGAAGCAATGA

Upstream 100 bases:

>100_bases
TCCTGATGACATTTTTTGTTTATTAAAGGGTTAAAAGAGGATGCTAAAAATGAAAAAGAGATTGATCACATGTGGGATTA
TTTTTATTTTCTTCTTTGTT

Downstream 100 bases:

>100_bases
ACCCAAAACATGAGAGTGAACCAAAACAAATTAGGGCGACGGATCAAAAACCAGCTAGTAACCAAAAACCAGATAGTAAA
CCAGAATCAGGAAATAGATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 687; Mature: 687

Protein sequence:

>687_residues
MITGISLAGSNDLFGLSTVNNTEGYSQKIIITENSGKDLTSYQVPIFLNSSNFNFSQAKPDGSDLRFSSRGKSLNYWIES
WDPEAEKALVWVKIPSLPANRDTALLLECGNPDAEAVSDGGRTFEFFDGFEGEKLKGLVWDSKKSGGGFVEVGNGTCKVT
VPKPHAYDTSLIYSKKSFDINSMFVVKRMKVTTGKDERGPLLKQGFIDQISSRKNEITHKTEFAGESRVGWETAYRKERY
NSFDKTDVRVSEGQWYTSGIAWYEENDTRSVAWYNNGIRDSKMDYSSSDYITNFPMRVYLYAESYSDASKNTGYMAVDYA
FVRKFVESEPAVSFASGQIETESSDKDNTSETDNVSESENTSSESGITPENETVLPEVSDTEEAQEKAVKVQESRSGNNT
ETLETRFPKYNVNVSGIKLSSPYSVDFHALVKELEASGIDTIFLSMNGPDVWQYERFVKMAHEEGISVHAVLLEELNCTS
ETAPSISRASLNAILDYNEKSLAPFDGINICVKTSPYSGSENSCMDYKPIFDLAHEKAGENVSVSASLPPGHTASEVETI
SPLVDFFIVRAYDRGNKDLTSMSDIVDNIAPDMGEVRGANSKGIIEISVEEGFADRLEIQNLFTSFVKYYGEDPAFTGVS
ISNYVTYTDLPVDAESEENKLSLPGFGAISVLLTGLAAFAFLRAKKQ

Sequences:

>Translated_687_residues
MITGISLAGSNDLFGLSTVNNTEGYSQKIIITENSGKDLTSYQVPIFLNSSNFNFSQAKPDGSDLRFSSRGKSLNYWIES
WDPEAEKALVWVKIPSLPANRDTALLLECGNPDAEAVSDGGRTFEFFDGFEGEKLKGLVWDSKKSGGGFVEVGNGTCKVT
VPKPHAYDTSLIYSKKSFDINSMFVVKRMKVTTGKDERGPLLKQGFIDQISSRKNEITHKTEFAGESRVGWETAYRKERY
NSFDKTDVRVSEGQWYTSGIAWYEENDTRSVAWYNNGIRDSKMDYSSSDYITNFPMRVYLYAESYSDASKNTGYMAVDYA
FVRKFVESEPAVSFASGQIETESSDKDNTSETDNVSESENTSSESGITPENETVLPEVSDTEEAQEKAVKVQESRSGNNT
ETLETRFPKYNVNVSGIKLSSPYSVDFHALVKELEASGIDTIFLSMNGPDVWQYERFVKMAHEEGISVHAVLLEELNCTS
ETAPSISRASLNAILDYNEKSLAPFDGINICVKTSPYSGSENSCMDYKPIFDLAHEKAGENVSVSASLPPGHTASEVETI
SPLVDFFIVRAYDRGNKDLTSMSDIVDNIAPDMGEVRGANSKGIIEISVEEGFADRLEIQNLFTSFVKYYGEDPAFTGVS
ISNYVTYTDLPVDAESEENKLSLPGFGAISVLLTGLAAFAFLRAKKQ
>Mature_687_residues
MITGISLAGSNDLFGLSTVNNTEGYSQKIIITENSGKDLTSYQVPIFLNSSNFNFSQAKPDGSDLRFSSRGKSLNYWIES
WDPEAEKALVWVKIPSLPANRDTALLLECGNPDAEAVSDGGRTFEFFDGFEGEKLKGLVWDSKKSGGGFVEVGNGTCKVT
VPKPHAYDTSLIYSKKSFDINSMFVVKRMKVTTGKDERGPLLKQGFIDQISSRKNEITHKTEFAGESRVGWETAYRKERY
NSFDKTDVRVSEGQWYTSGIAWYEENDTRSVAWYNNGIRDSKMDYSSSDYITNFPMRVYLYAESYSDASKNTGYMAVDYA
FVRKFVESEPAVSFASGQIETESSDKDNTSETDNVSESENTSSESGITPENETVLPEVSDTEEAQEKAVKVQESRSGNNT
ETLETRFPKYNVNVSGIKLSSPYSVDFHALVKELEASGIDTIFLSMNGPDVWQYERFVKMAHEEGISVHAVLLEELNCTS
ETAPSISRASLNAILDYNEKSLAPFDGINICVKTSPYSGSENSCMDYKPIFDLAHEKAGENVSVSASLPPGHTASEVETI
SPLVDFFIVRAYDRGNKDLTSMSDIVDNIAPDMGEVRGANSKGIIEISVEEGFADRLEIQNLFTSFVKYYGEDPAFTGVS
ISNYVTYTDLPVDAESEENKLSLPGFGAISVLLTGLAAFAFLRAKKQ

Specific function: Unknown

COG id: COG5306

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75943; Mature: 75943

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITGISLAGSNDLFGLSTVNNTEGYSQKIIITENSGKDLTSYQVPIFLNSSNFNFSQAKP
CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCC
DGSDLRFSSRGKSLNYWIESWDPEAEKALVWVKIPSLPANRDTALLLECGNPDAEAVSDG
CCCCCEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHCCC
GRTFEFFDGFEGEKLKGLVWDSKKSGGGFVEVGNGTCKVTVPKPHAYDTSLIYSKKSFDI
CCEEEECCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCEEEEECCCCCC
NSMFVVKRMKVTTGKDERGPLLKQGFIDQISSRKNEITHKTEFAGESRVGWETAYRKERY
CEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHC
NSFDKTDVRVSEGQWYTSGIAWYEENDTRSVAWYNNGIRDSKMDYSSSDYITNFPMRVYL
CCCCCCCEEEECCCEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEECCEEEEE
YAESYSDASKNTGYMAVDYAFVRKFVESEPAVSFASGQIETESSDKDNTSETDNVSESEN
EEECCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
TSSESGITPENETVLPEVSDTEEAQEKAVKVQESRSGNNTETLETRFPKYNVNVSGIKLS
CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCEEECEEEEEEEC
SPYSVDFHALVKELEASGIDTIFLSMNGPDVWQYERFVKMAHEEGISVHAVLLEELNCTS
CCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHCCCC
ETAPSISRASLNAILDYNEKSLAPFDGINICVKTSPYSGSENSCMDYKPIFDLAHEKAGE
CCCCCHHHHHHHEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCC
NVSVSASLPPGHTASEVETISPLVDFFIVRAYDRGNKDLTSMSDIVDNIAPDMGEVRGAN
CEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCHHHHCCCC
SKGIIEISVEEGFADRLEIQNLFTSFVKYYGEDPAFTGVSISNYVTYTDLPVDAESEENK
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEEECCCCCCCCCCCE
LSLPGFGAISVLLTGLAAFAFLRAKKQ
ECCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MITGISLAGSNDLFGLSTVNNTEGYSQKIIITENSGKDLTSYQVPIFLNSSNFNFSQAKP
CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCC
DGSDLRFSSRGKSLNYWIESWDPEAEKALVWVKIPSLPANRDTALLLECGNPDAEAVSDG
CCCCCEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHCCC
GRTFEFFDGFEGEKLKGLVWDSKKSGGGFVEVGNGTCKVTVPKPHAYDTSLIYSKKSFDI
CCEEEECCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCEEEEECCCCCC
NSMFVVKRMKVTTGKDERGPLLKQGFIDQISSRKNEITHKTEFAGESRVGWETAYRKERY
CEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHC
NSFDKTDVRVSEGQWYTSGIAWYEENDTRSVAWYNNGIRDSKMDYSSSDYITNFPMRVYL
CCCCCCCEEEECCCEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEECCEEEEE
YAESYSDASKNTGYMAVDYAFVRKFVESEPAVSFASGQIETESSDKDNTSETDNVSESEN
EEECCCCCCCCCCEEEEHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
TSSESGITPENETVLPEVSDTEEAQEKAVKVQESRSGNNTETLETRFPKYNVNVSGIKLS
CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCEEECEEEEEEEC
SPYSVDFHALVKELEASGIDTIFLSMNGPDVWQYERFVKMAHEEGISVHAVLLEELNCTS
CCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEHHHHCCCC
ETAPSISRASLNAILDYNEKSLAPFDGINICVKTSPYSGSENSCMDYKPIFDLAHEKAGE
CCCCCHHHHHHHEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCC
NVSVSASLPPGHTASEVETISPLVDFFIVRAYDRGNKDLTSMSDIVDNIAPDMGEVRGAN
CEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCHHHHCCCC
SKGIIEISVEEGFADRLEIQNLFTSFVKYYGEDPAFTGVSISNYVTYTDLPVDAESEENK
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEEECCCCCCCCCCCE
LSLPGFGAISVLLTGLAAFAFLRAKKQ
ECCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA