| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227712
Identifier: 21227712
GI number: 21227712
Start: 1920482
End: 1921669
Strand: Reverse
Name: 21227712
Synonym: MM_1610
Alternate gene names: NA
Gene position: 1921669-1920482 (Counterclockwise)
Preceding gene: 21227713
Following gene: 21227711
Centisome position: 46.91
GC content: 42.34
Gene sequence:
>1188_bases TTGAGCCTGCCAGAAAAAAAGAACTGTTTGAAACTGAGAGAGTTTACTTTAAGTTTATTTTCTCTAACCCTATTCCTGAT TTTCTTCTGCACACAGATAAATCCTGTTTACGGAGCTGTAAACGGGGCAGCTATTGAAGAAGAGAATGAAAACAGAATTA TTATTGGCTTTTTTTCAGACCATGACCTCAGTGATGCAACAGTCAGGTTTGAAGAACCCCATGAAAACGTTTCTCTTGTT TTTACCCTGAGTTCGGGAAAAGAAACTCTGAAATCAGAAACTTTCCACCTGGTTTCCGTAAAGAAAGACCAGGAGATTTC AAAAGTCTTTTTCTGGGAGCTTGAAGAAGACTTTGGGAAGGATAGGGACTCTTATACAGCACAGCTTTTTGTAAAAGAAG GCAATCAAATCCTTGAAACCCAGAAAACCTCATTTTCTTACCGTAACCCTCATCTTTCAAACCTGAAAGTTGTGGATTTT TCTGCAGATTCCGAAAAAGCTTCATTCCTGATAGATCTTGTAAGTTCCGCAAACCTCAGACTCGTGCAGATGCCTGAGCC CGGCATTGTAGATTTTGACCTTAAACTCCTTTCCGGCAAGGACATAATATACAGCGAAAGCCTGAAAAATGTCCCTGTAA CTGATGCTTATTATAAAACAATTAACTGGCCCTTGCTGCTGGAAAAAGACAGGAGCTACACCGCTCTCCTGAAAGTCCAT TCACATTCCCCCGAGCTTACCACCGCATATATGTCAGAATTCTGGGCGGAAGAAAAGGTAGAAATCCTTGATTCTGACAT CAACGTGGACGAGTACGGGGCAAGCGTGACTGTAACAGGAAGGTCACAGGTTCCTTTTAATGGAATTGTCAGGGTTGTTC TAACTCCTGAAGAAGGAGATGTCCGGGTGTTTGAAGAAACTGCGGATATCCTTACTGCGGGAAAAGAAGATACAGTAGGA ATCATCTGGCAGGGGGTTCCCAGAGGAGACTACAATGTAAAAATAGATGTGGTAAACCTCGACGGTGAAATACTTGACAG CCATGAAACGGTTTTGCGTGTTTTTGAGCCCGTAGCTGAACTAAATCCTCCTGAAGAGACTCCAGCACTTAGCTCTCAGG CAGCAACTGGAATTTTACTCTGTGTTGCTGTTTTTCTGGGAAGAAAAAAGAGAGGAAAAAAGGACTGA
Upstream 100 bases:
>100_bases TTAAACATAGAGGTTCCGACATACATCCATATTGCAGAGATCCTGATTGGGCTGATGGCTCTGCTTCTCTGCAGCTTTTG GAAAGAAGGAGGACCCGGGC
Downstream 100 bases:
>100_bases ACCAGGTAACTTTTGAATTATCTGGAGTTAAAACGAATCTGTATGCGGGATCACTATGCTTGACCTGATCATCCGAAACA TAACGAACCGGAAAATCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MSLPEKKNCLKLREFTLSLFSLTLFLIFFCTQINPVYGAVNGAAIEEENENRIIIGFFSDHDLSDATVRFEEPHENVSLV FTLSSGKETLKSETFHLVSVKKDQEISKVFFWELEEDFGKDRDSYTAQLFVKEGNQILETQKTSFSYRNPHLSNLKVVDF SADSEKASFLIDLVSSANLRLVQMPEPGIVDFDLKLLSGKDIIYSESLKNVPVTDAYYKTINWPLLLEKDRSYTALLKVH SHSPELTTAYMSEFWAEEKVEILDSDINVDEYGASVTVTGRSQVPFNGIVRVVLTPEEGDVRVFEETADILTAGKEDTVG IIWQGVPRGDYNVKIDVVNLDGEILDSHETVLRVFEPVAELNPPEETPALSSQAATGILLCVAVFLGRKKRGKKD
Sequences:
>Translated_395_residues MSLPEKKNCLKLREFTLSLFSLTLFLIFFCTQINPVYGAVNGAAIEEENENRIIIGFFSDHDLSDATVRFEEPHENVSLV FTLSSGKETLKSETFHLVSVKKDQEISKVFFWELEEDFGKDRDSYTAQLFVKEGNQILETQKTSFSYRNPHLSNLKVVDF SADSEKASFLIDLVSSANLRLVQMPEPGIVDFDLKLLSGKDIIYSESLKNVPVTDAYYKTINWPLLLEKDRSYTALLKVH SHSPELTTAYMSEFWAEEKVEILDSDINVDEYGASVTVTGRSQVPFNGIVRVVLTPEEGDVRVFEETADILTAGKEDTVG IIWQGVPRGDYNVKIDVVNLDGEILDSHETVLRVFEPVAELNPPEETPALSSQAATGILLCVAVFLGRKKRGKKD >Mature_394_residues SLPEKKNCLKLREFTLSLFSLTLFLIFFCTQINPVYGAVNGAAIEEENENRIIIGFFSDHDLSDATVRFEEPHENVSLVF TLSSGKETLKSETFHLVSVKKDQEISKVFFWELEEDFGKDRDSYTAQLFVKEGNQILETQKTSFSYRNPHLSNLKVVDFS ADSEKASFLIDLVSSANLRLVQMPEPGIVDFDLKLLSGKDIIYSESLKNVPVTDAYYKTINWPLLLEKDRSYTALLKVHS HSPELTTAYMSEFWAEEKVEILDSDINVDEYGASVTVTGRSQVPFNGIVRVVLTPEEGDVRVFEETADILTAGKEDTVGI IWQGVPRGDYNVKIDVVNLDGEILDSHETVLRVFEPVAELNPPEETPALSSQAATGILLCVAVFLGRKKRGKKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44394; Mature: 44262
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPEKKNCLKLREFTLSLFSLTLFLIFFCTQINPVYGAVNGAAIEEENENRIIIGFFSD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCCEEEEEEECC HDLSDATVRFEEPHENVSLVFTLSSGKETLKSETFHLVSVKKDQEISKVFFWELEEDFGK CCCCCCEEEEECCCCCEEEEEEECCCCHHHHCCCEEEEEECCCCCCCEEEEEEEHHHHCC DRDSYTAQLFVKEGNQILETQKTSFSYRNPHLSNLKVVDFSADSEKASFLIDLVSSANLR CCCCEEEEEEEECCCCEEHHHHCCCCCCCCCCCCEEEEEECCCCCHHHEEEEECCCCCEE LVQMPEPGIVDFDLKLLSGKDIIYSESLKNVPVTDAYYKTINWPLLLEKDRSYTALLKVH EEECCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHCCCCEEEECCCCEEEEEEEE SHSPELTTAYMSEFWAEEKVEILDSDINVDEYGASVTVTGRSQVPFNGIVRVVLTPEEGD CCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHCCCEEEEECCCCCCCCCEEEEEEECCCCC VRVFEETADILTAGKEDTVGIIWQGVPRGDYNVKIDVVNLDGEILDSHETVLRVFEPVAE EEEEEHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECCCCEECCHHHHHHHHHHHHH LNPPEETPALSSQAATGILLCVAVFLGRKKRGKKD CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SLPEKKNCLKLREFTLSLFSLTLFLIFFCTQINPVYGAVNGAAIEEENENRIIIGFFSD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCCEEEEEEECC HDLSDATVRFEEPHENVSLVFTLSSGKETLKSETFHLVSVKKDQEISKVFFWELEEDFGK CCCCCCEEEEECCCCCEEEEEEECCCCHHHHCCCEEEEEECCCCCCCEEEEEEEHHHHCC DRDSYTAQLFVKEGNQILETQKTSFSYRNPHLSNLKVVDFSADSEKASFLIDLVSSANLR CCCCEEEEEEEECCCCEEHHHHCCCCCCCCCCCCEEEEEECCCCCHHHEEEEECCCCCEE LVQMPEPGIVDFDLKLLSGKDIIYSESLKNVPVTDAYYKTINWPLLLEKDRSYTALLKVH EEECCCCCEEEEEEEEECCCCEEEECCCCCCCCCHHHHHHCCCCEEEECCCCEEEEEEEE SHSPELTTAYMSEFWAEEKVEILDSDINVDEYGASVTVTGRSQVPFNGIVRVVLTPEEGD CCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHCCCEEEEECCCCCCCCCEEEEEEECCCCC VRVFEETADILTAGKEDTVGIIWQGVPRGDYNVKIDVVNLDGEILDSHETVLRVFEPVAE EEEEEHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEEECCCCEECCHHHHHHHHHHHHH LNPPEETPALSSQAATGILLCVAVFLGRKKRGKKD CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA