| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227707
Identifier: 21227707
GI number: 21227707
Start: 1916206
End: 1916994
Strand: Direct
Name: 21227707
Synonym: MM_1605
Alternate gene names: NA
Gene position: 1916206-1916994 (Clockwise)
Preceding gene: 21227704
Following gene: 21227708
Centisome position: 46.78
GC content: 39.29
Gene sequence:
>789_bases ATGAGTAACTCGCTTCTAGAATTGATTTTCCTCTCCGAAAAAAGGAAAAATCTTCTTTTATTTTTAAAAGAGGGGCCAAA AAATATAGAAGAAATAAAAACAAATCTGGATACGAGCGCTGTAGCCATTCTTCCCCAGATTAAAAAATTAAGGGATGATT CTCTGGTATTCAGGACAGAAGACTCTTACTTTCTGTCTCCTCTTGGCATAGCGGTAGCTGAGAGAATGCACGCGATGATG CGTGTATTAAATGTCTTTTCCAGGAACTACGATTACTGGGCAGACCATGCAGTTGAGTGTTTGCCTTCTCCTTTAAAGAG CAGGATTGGAGATCTGGAGAACTGTATCTTTTCCGAACCTCCTGACTGGACACACCTCTTTGAACCTCACAGGGAATTCG TGGAAAAACTTACAGTATCGAGAAAGATAAAAGGAATTTCCGCCATCTTTTTTCCTCTTTACCCTTCCCTTTTCCTTTCT TTTGCGAAAAATGGAGCAGATGTAACTCTTCTTGTGACCCTTCCGGTTTATGAGAGAATAAAAGGAGAATACAGGTCTGA ATTAAGGGAATTTCTCAGCCTCGATAACACCTGTTTATATGTATGCGAGGAAAAAATAGAATTTTCTCATGTTGTCACTG ATAAATTTCTCTCTTTGAGTCTTCCTTTTTCTAACGGCGCTTTTGACCATACGCGCGATGTCCTGTGTTTTGACCCTGTT GCACTTAAATGGGGAGAAGACCTTTTTGCTTACTACAGGGATAGATCAGAAAAAATAAAGAAAGTATAA
Upstream 100 bases:
>100_bases CATCCAAAAAAAATTTTCATATCTGGTTTCACGCTTTTGAATAAAAATAGTTGAATAATACGAAAGATACTTATCAAGTC TTTACTTATCTCTTATAGAC
Downstream 100 bases:
>100_bases CCAGATCAATTCCGGTCTTTGTCCTCCTCCGGTCTTTCAATGAGAGAAGGAGAGCTGAAAGATAGCTATAAATCAGGCGC TGACTATCCCTTATATTATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MSNSLLELIFLSEKRKNLLLFLKEGPKNIEEIKTNLDTSAVAILPQIKKLRDDSLVFRTEDSYFLSPLGIAVAERMHAMM RVLNVFSRNYDYWADHAVECLPSPLKSRIGDLENCIFSEPPDWTHLFEPHREFVEKLTVSRKIKGISAIFFPLYPSLFLS FAKNGADVTLLVTLPVYERIKGEYRSELREFLSLDNTCLYVCEEKIEFSHVVTDKFLSLSLPFSNGAFDHTRDVLCFDPV ALKWGEDLFAYYRDRSEKIKKV
Sequences:
>Translated_262_residues MSNSLLELIFLSEKRKNLLLFLKEGPKNIEEIKTNLDTSAVAILPQIKKLRDDSLVFRTEDSYFLSPLGIAVAERMHAMM RVLNVFSRNYDYWADHAVECLPSPLKSRIGDLENCIFSEPPDWTHLFEPHREFVEKLTVSRKIKGISAIFFPLYPSLFLS FAKNGADVTLLVTLPVYERIKGEYRSELREFLSLDNTCLYVCEEKIEFSHVVTDKFLSLSLPFSNGAFDHTRDVLCFDPV ALKWGEDLFAYYRDRSEKIKKV >Mature_261_residues SNSLLELIFLSEKRKNLLLFLKEGPKNIEEIKTNLDTSAVAILPQIKKLRDDSLVFRTEDSYFLSPLGIAVAERMHAMMR VLNVFSRNYDYWADHAVECLPSPLKSRIGDLENCIFSEPPDWTHLFEPHREFVEKLTVSRKIKGISAIFFPLYPSLFLSF AKNGADVTLLVTLPVYERIKGEYRSELREFLSLDNTCLYVCEEKIEFSHVVTDKFLSLSLPFSNGAFDHTRDVLCFDPVA LKWGEDLFAYYRDRSEKIKKV
Specific function: Unknown
COG id: COG4742
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30347; Mature: 30216
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSLLELIFLSEKRKNLLLFLKEGPKNIEEIKTNLDTSAVAILPQIKKLRDDSLVFRTE CCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEC DSYFLSPLGIAVAERMHAMMRVLNVFSRNYDYWADHAVECLPSPLKSRIGDLENCIFSEP CCCEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCHHHHHHCCCC PDWTHLFEPHREFVEKLTVSRKIKGISAIFFPLYPSLFLSFAKNGADVTLLVTLPVYERI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH KGEYRSELREFLSLDNTCLYVCEEKIEFSHVVTDKFLSLSLPFSNGAFDHTRDVLCFDPV HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCH ALKWGEDLFAYYRDRSEKIKKV HHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SNSLLELIFLSEKRKNLLLFLKEGPKNIEEIKTNLDTSAVAILPQIKKLRDDSLVFRTE CCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEC DSYFLSPLGIAVAERMHAMMRVLNVFSRNYDYWADHAVECLPSPLKSRIGDLENCIFSEP CCCEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCHHHHHHCCCC PDWTHLFEPHREFVEKLTVSRKIKGISAIFFPLYPSLFLSFAKNGADVTLLVTLPVYERI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH KGEYRSELREFLSLDNTCLYVCEEKIEFSHVVTDKFLSLSLPFSNGAFDHTRDVLCFDPV HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCH ALKWGEDLFAYYRDRSEKIKKV HHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA