| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227675
Identifier: 21227675
GI number: 21227675
Start: 1873661
End: 1874965
Strand: Direct
Name: 21227675
Synonym: MM_1573
Alternate gene names: NA
Gene position: 1873661-1874965 (Clockwise)
Preceding gene: 21227673
Following gene: 21227677
Centisome position: 45.74
GC content: 32.49
Gene sequence:
>1305_bases ATGGTAACTATAAACCTTACTCTTAATAACTTTTCGGAGCTCCCTGCTCTTTTAGACGTTTTTGGTTGTTTTGGAAACGA TTACGAATACACTACACAAGGAATTTTTCGTAGAAAAATTCCTCCAGCCTGTTCTATTTGTAGTACTCCAATGGTTCATA ATGGCTATAATCCCCATACCAAACAAGGTCTTGGAGAAATCATCATTGGTCGATATAAATGCTCAAATTGTGGTAGTACA CACGAAGAAGATCATAGCTTTTGGGAAGATCTGAAAGCTTTACTTTATGATTCATTCAATGATTTCTTCAAGTTACTCAG ATACCATAACGTTTCATATGAAGGAATCTCTGATATAATGGACTTCATCTATCCAAGATCAAGAAGCACTATTTTAAGAG CATTCTACAAAGAAATGGAACAGGAAACTGTTCCATTTTCAGAAAATATACATATGGTACACTATGACGAACAACATCCA AAAGAAGGACGCTGTCAGAAATACCGTTTAACCTTACTGGACGCAAAAACTCAAACAACAATAGCAGATGACCTTTTTGA TGATAAGAGTCCAGAAACAATCAAGGAATTTCTACGGAAAAATCTTGATGCATCAGAACCTGTGTTTATCGTTACGGATT TTGATAAGAGATACCCTGATATATTAAAGGAAATTTTTGGAGATAAGTTAGTGCATCAATATTGTTTGATGCACTTAAAC AAGCTTATAGTTAGTGATTTTCCAAAAAATACAACCATTGAACAGGAACTATTGAAGTACAGGTTATTGAATATATTTTA CAATCGAGAGAATGAAATTAAATTTTTGGAAGAACTTCAATCTGAAGAACTCAACGTAATTAATAATGAAGAAAAACATC AAGAATGGAGTAAAAAAGCAAAAAAGGAATTTAACCAGTTTAGACGTAAATTAAAGCTTGAAAGAAGACGAAAAAAGGAA AATCTTCCACTTAATAGTCTTGAAAAAGCAAAACATAACTTCGATAAATTAATGGAAAATATAAGAACATACGATCAAAC GATTCAAAAACGATTATGGATGATCAATAAACACTGGTTAAATCTTACTTTGTTCCATTATCTTCCAGGAGCGCCAGCGA CAAATAACCCTATCGAAAGCTATTATTCTAAAAGTCTAAAAACTGATAACAAGAAGCAGTTCAGGACTGATAAAGGAATT GGGAACCAGATTAAACTTACTCAAATGAGAAGATTAAATTTGCTCAAGAAACCACAAAAGTCATTTCTGGAATTGTTCAG ATTATTTAATCCATTTAAGCTTTAG
Upstream 100 bases:
>100_bases ATCCATGACTCAGTTCCAAAATCTAGTGATAAAAGTAAATGTAACATCACTACACAAAATTATAATTCTATAATTATGTA ATGATGTTACGGCACAAATA
Downstream 100 bases:
>100_bases TAATCTATTTTGGGATAGGAGTTAAGGATTATGTAGCGGAGCGTATCGATTTTAGGCAAAAAATAAAGTGAAAAATTAAA GGAATAAAAGAATTCTTTGG
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MVTINLTLNNFSELPALLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHTKQGLGEIIIGRYKCSNCGST HEEDHSFWEDLKALLYDSFNDFFKLLRYHNVSYEGISDIMDFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHP KEGRCQKYRLTLLDAKTQTTIADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELQSEELNVINNEEKHQEWSKKAKKEFNQFRRKLKLERRRKKE NLPLNSLEKAKHNFDKLMENIRTYDQTIQKRLWMINKHWLNLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGI GNQIKLTQMRRLNLLKKPQKSFLELFRLFNPFKL
Sequences:
>Translated_434_residues MVTINLTLNNFSELPALLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHTKQGLGEIIIGRYKCSNCGST HEEDHSFWEDLKALLYDSFNDFFKLLRYHNVSYEGISDIMDFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHP KEGRCQKYRLTLLDAKTQTTIADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELQSEELNVINNEEKHQEWSKKAKKEFNQFRRKLKLERRRKKE NLPLNSLEKAKHNFDKLMENIRTYDQTIQKRLWMINKHWLNLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGI GNQIKLTQMRRLNLLKKPQKSFLELFRLFNPFKL >Mature_434_residues MVTINLTLNNFSELPALLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHTKQGLGEIIIGRYKCSNCGST HEEDHSFWEDLKALLYDSFNDFFKLLRYHNVSYEGISDIMDFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHP KEGRCQKYRLTLLDAKTQTTIADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELQSEELNVINNEEKHQEWSKKAKKEFNQFRRKLKLERRRKKE NLPLNSLEKAKHNFDKLMENIRTYDQTIQKRLWMINKHWLNLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGI GNQIKLTQMRRLNLLKKPQKSFLELFRLFNPFKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51766; Mature: 51766
Theoretical pI: Translated: 8.99; Mature: 8.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTINLTLNNFSELPALLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHT CEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHH KQGLGEIIIGRYKCSNCGSTHEEDHSFWEDLKALLYDSFNDFFKLLRYHNVSYEGISDIM HHCHHHHHEECEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH DFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHPKEGRCQKYRLTLLDAKTQTT HHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHEEEEEEECCHHHH IADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN HHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELQSEELNVINNEEKHQEWSKKA HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH KKEFNQFRRKLKLERRRKKENLPLNSLEKAKHNFDKLMENIRTYDQTIQKRLWMINKHWL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGIGNQIKLTQMRRLNLLKKPQK HEEHEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCHHH SFLELFRLFNPFKL HHHHHHHHHCCCCC >Mature Secondary Structure MVTINLTLNNFSELPALLDVFGCFGNDYEYTTQGIFRRKIPPACSICSTPMVHNGYNPHT CEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHH KQGLGEIIIGRYKCSNCGSTHEEDHSFWEDLKALLYDSFNDFFKLLRYHNVSYEGISDIM HHCHHHHHEECEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH DFIYPRSRSTILRAFYKEMEQETVPFSENIHMVHYDEQHPKEGRCQKYRLTLLDAKTQTT HHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHEEEEEEECCHHHH IADDLFDDKSPETIKEFLRKNLDASEPVFIVTDFDKRYPDILKEIFGDKLVHQYCLMHLN HHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH KLIVSDFPKNTTIEQELLKYRLLNIFYNRENEIKFLEELQSEELNVINNEEKHQEWSKKA HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH KKEFNQFRRKLKLERRRKKENLPLNSLEKAKHNFDKLMENIRTYDQTIQKRLWMINKHWL HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLTLFHYLPGAPATNNPIESYYSKSLKTDNKKQFRTDKGIGNQIKLTQMRRLNLLKKPQK HEEHEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCHHH SFLELFRLFNPFKL HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA