| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is bp26 [H]
Identifier: 21227673
GI number: 21227673
Start: 1871428
End: 1872177
Strand: Direct
Name: bp26 [H]
Synonym: MM_1571
Alternate gene names: 21227673
Gene position: 1871428-1872177 (Clockwise)
Preceding gene: 21227671
Following gene: 21227675
Centisome position: 45.69
GC content: 43.73
Gene sequence:
>750_bases ATGCCACAGGAAAATAAAAACGATAAATCTTATTATGTTATCATTGCGCTGTCAGTTGTTCTGGTGCTGATGGCAGCAAC GATATATGCCATTTCACAGAATGAGCCTGAAAAGGATGCGGAAAATACTATTTCCATGAGCGGGTATGCTGAACAGAAGG TTGTCCCTGACACGGCAACAATGAGAATAGGTGTTGTGATCCAGGCTGCTACTGCGAAGGAAGCATCCGACGAAAATGCA GCCATTATGAGCAATATAGTATCAGAGCTCAAAGCAATTGGATTGCAGGACAGGGAAATACAGACCTCCTATGTGTCCGT ATACCCTATATACAGCTATGATACGACACAAAAAATTACAGGTTACGCAGCATCCAATAGCGTGCAGATCACAACCACAA ATCTCGACAACCTGAGTCAGATTATTGACAGGTCCACAGCTGCCGGAGCTAATGAGATTGGAAGCATTTCATTCTCAGTA TCCGATGATATGCAAAAGCAGCTTCGTGAGGACCTGATGAATGAGGCAATCAATGACGCATCATCAAAAGCCGATACGCT TGCTAAGAGCCTGGGTGTTGAGATTACTGGTGTGAAGACTTCATCTATAAGTGAAAGCAACGGGCCCAGAGTATATTATG AATACGATATGGCAGTAGAAGAAAAGGCTTCCGGAGCAGTTTCCACTCCTATTGAGCCAGGCGAATCTACTGTCTCGATG TCAGTACAGGTCACGTACTACATTAAATAA
Upstream 100 bases:
>100_bases AAGTTTAAGCAATTCTTTAATATGTGCGTGTACATCTATGACTTGCTATAATTGACCGAACCGCCAGCAAATAAAGTACT GAGCAAGGAGTATGTGAAAA
Downstream 100 bases:
>100_bases GAAATCTGTAAATAAGAAATCCGGACCAGGGAGTCTGACCGCTTAAATGTACAGGTGACCGGGAGTTGCAGATGACGGAT GTTGTTTGCGATTTCTCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MPQENKNDKSYYVIIALSVVLVLMAATIYAISQNEPEKDAENTISMSGYAEQKVVPDTATMRIGVVIQAATAKEASDENA AIMSNIVSELKAIGLQDREIQTSYVSVYPIYSYDTTQKITGYAASNSVQITTTNLDNLSQIIDRSTAAGANEIGSISFSV SDDMQKQLREDLMNEAINDASSKADTLAKSLGVEITGVKTSSISESNGPRVYYEYDMAVEEKASGAVSTPIEPGESTVSM SVQVTYYIK
Sequences:
>Translated_249_residues MPQENKNDKSYYVIIALSVVLVLMAATIYAISQNEPEKDAENTISMSGYAEQKVVPDTATMRIGVVIQAATAKEASDENA AIMSNIVSELKAIGLQDREIQTSYVSVYPIYSYDTTQKITGYAASNSVQITTTNLDNLSQIIDRSTAAGANEIGSISFSV SDDMQKQLREDLMNEAINDASSKADTLAKSLGVEITGVKTSSISESNGPRVYYEYDMAVEEKASGAVSTPIEPGESTVSM SVQVTYYIK >Mature_248_residues PQENKNDKSYYVIIALSVVLVLMAATIYAISQNEPEKDAENTISMSGYAEQKVVPDTATMRIGVVIQAATAKEASDENAA IMSNIVSELKAIGLQDREIQTSYVSVYPIYSYDTTQKITGYAASNSVQITTTNLDNLSQIIDRSTAAGANEIGSISFSVS DDMQKQLREDLMNEAINDASSKADTLAKSLGVEITGVKTSSISESNGPRVYYEYDMAVEEKASGAVSTPIEPGESTVSMS VQVTYYIK
Specific function: Unknown
COG id: COG2968
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007497 [H]
Pfam domain/function: PF04402 DUF541 [H]
EC number: NA
Molecular weight: Translated: 26868; Mature: 26737
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQENKNDKSYYVIIALSVVLVLMAATIYAISQNEPEKDAENTISMSGYAEQKVVPDTAT CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCE MRIGVVIQAATAKEASDENAAIMSNIVSELKAIGLQDREIQTSYVSVYPIYSYDTTQKIT EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCHHEE GYAASNSVQITTTNLDNLSQIIDRSTAAGANEIGSISFSVSDDMQKQLREDLMNEAINDA EEECCCEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHC SSKADTLAKSLGVEITGVKTSSISESNGPRVYYEYDMAVEEKASGAVSTPIEPGESTVSM CHHHHHHHHHHCEEEEEEEECCCCCCCCCEEEEEECCEEHHHCCCCCCCCCCCCCCEEEE SVQVTYYIK EEEEEEEEC >Mature Secondary Structure PQENKNDKSYYVIIALSVVLVLMAATIYAISQNEPEKDAENTISMSGYAEQKVVPDTAT CCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCE MRIGVVIQAATAKEASDENAAIMSNIVSELKAIGLQDREIQTSYVSVYPIYSYDTTQKIT EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCHHEE GYAASNSVQITTTNLDNLSQIIDRSTAAGANEIGSISFSVSDDMQKQLREDLMNEAINDA EEECCCEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHC SSKADTLAKSLGVEITGVKTSSISESNGPRVYYEYDMAVEEKASGAVSTPIEPGESTVSM CHHHHHHHHHHCEEEEEEEECCCCCCCCCEEEEEECCEEHHHCCCCCCCCCCCCCCEEEE SVQVTYYIK EEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8748294 [H]