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The map label for this gene is rnp4

Identifier: 21227658

GI number: 21227658

Start: 1856756

End: 1857079

Strand: Direct

Name: rnp4

Synonym: MM_1556

Alternate gene names: 21227658

Gene position: 1856756-1857079 (Clockwise)

Preceding gene: 21227657

Following gene: 21227660

Centisome position: 45.33

GC content: 42.59

Gene sequence:

>324_bases
ATGCCCAGAGCAGCCAGGAAACAGCAAAAAAACCTTATTCAGAACATAGCCGTCCAGCGTATGTGGCGGCTTTTTGAGCG
TGCAAAAGTTGAGCTTCCGGAAAACCCTGAGCGCAGCAGGCATTACGTGCAGCTCATACGAAACATTTCCATGAGGAACA
GGATAAGCATTCCGAGAGAAATCAAAAGCAGGATCTGTAAACACTGCTATTCTTTTCTTACTCCCGGATATAATGCACGC
TACAGATTGAATGAAGGGTTTGTTGTCATAACCTGTGAACATTGCGGAAAGGAAATGAGGTATCCTTATAAAAAATTAAA
ATAA

Upstream 100 bases:

>100_bases
AACCCGGATATTAATGTGATTATTTTTGATTCCTGATCAGTTTCCTTCGACGGATAGAACAGGACACCCATTTAAGTAAA
ATTCCAGGATAGATTTACCA

Downstream 100 bases:

>100_bases
AATCAGGGTTATGTTTCCCCCTTTCCAGGTTAACAGGCAGTTTTAAGCTTCATTTGCAATTCAGGTAGCGATCCGGGTAC
TGTCTTCACAAACAGAATAA

Product: hypothetical protein

Products: NA

Alternate protein names: RNase P component 4

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MPRAARKQQKNLIQNIAVQRMWRLFERAKVELPENPERSRHYVQLIRNISMRNRISIPREIKSRICKHCYSFLTPGYNAR
YRLNEGFVVITCEHCGKEMRYPYKKLK

Sequences:

>Translated_107_residues
MPRAARKQQKNLIQNIAVQRMWRLFERAKVELPENPERSRHYVQLIRNISMRNRISIPREIKSRICKHCYSFLTPGYNAR
YRLNEGFVVITCEHCGKEMRYPYKKLK
>Mature_106_residues
PRAARKQQKNLIQNIAVQRMWRLFERAKVELPENPERSRHYVQLIRNISMRNRISIPREIKSRICKHCYSFLTPGYNARY
RLNEGFVVITCEHCGKEMRYPYKKLK

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG2023

COG function: function code J; RNase P subunit RPR2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP4_METMA (Q8PWM8)

Other databases:

- EMBL:   AE008384
- RefSeq:   NP_633580.1
- ProteinModelPortal:   Q8PWM8
- SMR:   Q8PWM8
- GeneID:   1479898
- GenomeReviews:   AE008384_GR
- KEGG:   mma:MM_1556
- NMPDR:   fig|192952.1.peg.1556
- HOGENOM:   HBG731499
- OMA:   HARYPYD
- ProtClustDB:   CLSK811662
- BioCyc:   MMAZ192952:MM1556-MONOMER
- BRENDA:   3.1.26.5
- HAMAP:   MF_00757
- InterPro:   IPR016432
- InterPro:   IPR007175
- PANTHER:   PTHR14742
- PIRSF:   PIRSF004878

Pfam domain/function: PF04032 Rpr2

EC number: =3.1.26.5

Molecular weight: Translated: 12996; Mature: 12864

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRAARKQQKNLIQNIAVQRMWRLFERAKVELPENPERSRHYVQLIRNISMRNRISIPRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
IKSRICKHCYSFLTPGYNARYRLNEGFVVITCEHCGKEMRYPYKKLK
HHHHHHHHHHHHHCCCCCCEEEECCCEEEEEHHHCCCHHCCCHHHCC
>Mature Secondary Structure 
PRAARKQQKNLIQNIAVQRMWRLFERAKVELPENPERSRHYVQLIRNISMRNRISIPRE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
IKSRICKHCYSFLTPGYNARYRLNEGFVVITCEHCGKEMRYPYKKLK
HHHHHHHHHHHHHCCCCCCEEEECCCEEEEEHHHCCCHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824